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Report for CCDS24389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24389.1 Public Mus musculus 11 Zmat5 23 108 98 CCDS HistoryNCBI Gene:67178Re-query CCDS DB by CCDS ID:24389.1Re-query CCDS DB by GeneID:67178See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009220.4 ENSMUSP00000009220.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009220.4Link to Ensembl Protein Viewer:ENSMUSP00000009220.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000009220Re-query CCDS DB by Protein ID:ENSMUSP00000009220
Original member NCBI NM_001356390.1 NP_001343319.1 Updated not alive Link to Nucleotide Sequence:NM_001356390.1Link to Protein Sequence:NP_001343319.1Re-query CCDS DB by Nucleotide ID:NM_001356390Re-query CCDS DB by Protein ID:NP_001343319
Current member NCBI NM_001356390.2 NP_001343319.1 Accepted alive Link to Nucleotide Sequence:NM_001356390.2Link to Protein Sequence:NP_001343319.1Re-query CCDS DB by Nucleotide ID:NM_001356390Re-query CCDS DB by Protein ID:NP_001343319Link to BLAST:NP_001343319.1
Original member NCBI NM_026015.3 NP_080291.1 Updated not alive Link to Nucleotide Sequence:NM_026015.3Link to Protein Sequence:NP_080291.1Re-query CCDS DB by Nucleotide ID:NM_026015Re-query CCDS DB by Protein ID:NP_080291
Current member NCBI NM_026015.4 NP_080291.1 Accepted alive Link to Nucleotide Sequence:NM_026015.4Link to Protein Sequence:NP_080291.1Re-query CCDS DB by Nucleotide ID:NM_026015Re-query CCDS DB by Protein ID:NP_080291Link to BLAST:NP_080291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343319.1 170 Q9CQR5 170 100% 0 0
NP_080291.1 170 Q9CQR5 170 100% 0 0

Chromosomal Locations for CCDS 24389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4722385 4722511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4728585 4728647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4730187 4730267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4732067 4732178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4737332 4737461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGGGGAAGCGGTACTTCTGTGACTACTGTGACCGCTCCTTCCAGGACAACCTCCACAACCGAAAGAAGC
ACCTGAATGGACTGCAGCACCTCAAGGCCAAGAAGGTGTGGTACGACATGTTCCGAGATGCAGCTGCCAT
CTTGCTGGATGAACAGAACAAGCGGCCCTGCAGGAAATTCCTGCTGACAGGCCAGTGCGACTTTGGCTCC
AACTGCAGGTTTTCCCACATGTCAGAACAAGATCTGCAGGAGCTGAGCGTCCAGGTGGAAGAGGAGAGGC
GGGCCAGAGAATGGCCCCTAGAGACCGCCGAGCTTCCTGAGGGCCACCTGGAGGACTGGCTGGAGAAGAG
AGCTAAGAGGCTAAGCTCAGCCCCAAGTAGCAGGGCTGAACCCATCAGAACCACTGTCTTCCAGTATCCA
GTGGGCTGGCCGCCAATGCAGGAGCTGCCCCCCTCCCTGCGGGCACCCCCACCTGGAGGGTGGTCCGTAC
TGTCCAAAGTCCAGTGGGGCTGA

Translation (170 aa):
MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLTGQCDFGS
NCRFSHMSEQDLQELSVQVEEERRAREWPLETAELPEGHLEDWLEKRAKRLSSAPSSRAEPIRTTVFQYP
VGWPPMQELPPSLRAPPPGGWSVLSKVQWG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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