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Report for CCDS29976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29976.1 Public Mus musculus X Pim2 23 108 98 CCDS HistoryNCBI Gene:18715Re-query CCDS DB by CCDS ID:29976.1Re-query CCDS DB by GeneID:18715See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 29976.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000223553.1 ENSMUSP00000152537.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223553.1Link to Ensembl Protein Viewer:ENSMUSP00000152537.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223553Re-query CCDS DB by Protein ID:ENSMUSP00000152537
Original member Current member NCBI NM_138606.2 NP_613072.1 Accepted alive Link to Nucleotide Sequence:NM_138606.2Link to Protein Sequence:NP_613072.1Re-query CCDS DB by Nucleotide ID:NM_138606Re-query CCDS DB by Protein ID:NP_613072Link to BLAST:NP_613072.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613072.1 370 Q62070-1 370 100% 0 0

Chromosomal Locations for CCDS 29976.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7878319 7878556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7878684 7878793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7879628 7879678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7881248 7881620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7882073 7882249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7882354 7882517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon CTG) with M at amino acid position 1

Nucleotide Sequence (1113 nt):
CTGGCGCGCGCGACGAATCTTAACGCTGCGCCGTCTGCAGGCGCTTCCGGGCCGCCAGATTCCCTGCCTT
CCACCCTGGCGCCCCCCAGCCCTGGCTCTCCGGCCGCTCTGCCCCGGGCATCCACGCCCTGCGGGCTCAG
CGGATTCAGCGGGCTCAATATACGCAGCACCTCCTCCATGTTGACCAAGCCTCTGCAGGGGCATCCTTCG
CCCCCTGTGACCCCCACGCAGCCTCCAGGAGGCAAGGATCGGGCAGCTTTCGAGGCCGAATACCGACTTG
GCCCCCTCCTGGGTAAGGGAGGCTTTGGCACCGTCTTCGCGGGACACCGCGTCACGGATAGACGTCAGGT
GGCCATCAAAGTAATCTCCCGGAACCGTGTGCTAGGCTGGTCCACCGTGTCAGACTCAGTCACCTGCCCA
CTTGAGGTTGCGCTGCTGTGGAAGGTGGGTGAAGGCAATGGCCATCCGGGTGTGATACGCCTTCTTGACT
GGTTCGAAACACCCGAAGGCTTCATGCTGGTCCTTGAGCGGCCTATGCCTGCTCAGGATCTCTTCGACTA
TATCACAGAGAAGGGGCCGCTGGGTGAAAGCTGTAGCCGCAGCTTCTTTACCCAAGTCGTGGCAGCTGTC
CAGCACTGCCACGCCCGTGGAGTTGTCCATCGGGATATCAAGGATGAGAACATCCTGATCGACCTATGCC
GGGGTTCCATTAAACTCATTGATTTTGGTTCCGGCGCCCTGCTTCACGATGAGCCGTACACTGACTTTGA
TGGGACAAGAGTGTATAGCCCTCCAGAGTGGATCTCGCGACACCAGTACCATGCCCTGCCAGCGACCGTC
TGGTCACTAGGTGTCCTACTCTATGACATGGTCTGTGGGGACATTCCCTTCGAGAGAGACCAGGAGATTC
TGGAGGCTGAGCTGCACTTCCCTGCTCATGTCTCCCCAGATTGCTGTGCCCTAATCCGCCGGTGCCTGGC
CCCTAAACCCTGCTCCCGACCCTCACTGGAGGAGATTCTGCTGGACCCCTGGATGCAATCACCAGCTGAA
GAAAAGCCCATCAACTCCTCCAAAGGAAGCCCCACCCCCTTGCCCTGGTCCCTGCTTCCCTAG

Translation (370 aa):
MARATNLNAAPSAGASGPPDSLPSTLAPPSPGSPAALPRASTPCGLSGFSGLNIRSTSSMLTKPLQGHPS
PPVTPTQPPGGKDRAAFEAEYRLGPLLGKGGFGTVFAGHRVTDRRQVAIKVISRNRVLGWSTVSDSVTCP
LEVALLWKVGEGNGHPGVIRLLDWFETPEGFMLVLERPMPAQDLFDYITEKGPLGESCSRSFFTQVVAAV
QHCHARGVVHRDIKDENILIDLCRGSIKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATV
WSLGVLLYDMVCGDIPFERDQEILEAELHFPAHVSPDCCALIRRCLAPKPCSRPSLEEILLDPWMQSPAE
EKPINSSKGSPTPLPWSLLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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