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Report for CCDS16117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16117.1 Public Mus musculus 2 Dlx2 23 108 98 CCDS HistoryNCBI Gene:13392Re-query CCDS DB by CCDS ID:16117.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16117.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024159.7 ENSMUSP00000024159.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024159.7Link to Ensembl Protein Viewer:ENSMUSP00000024159.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000024159Re-query CCDS DB by Protein ID:ENSMUSP00000024159
Original member NCBI NM_010054.2 NP_034184.1 Updated not alive Link to Nucleotide Sequence:NM_010054.2Link to Protein Sequence:NP_034184.1Re-query CCDS DB by Nucleotide ID:NM_010054Re-query CCDS DB by Protein ID:NP_034184
Current member NCBI NM_010054.3 NP_034184.1 Accepted alive Link to Nucleotide Sequence:NM_010054.3Link to Protein Sequence:NP_034184.1Re-query CCDS DB by Nucleotide ID:NM_010054Re-query CCDS DB by Protein ID:NP_034184Link to BLAST:NP_034184.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034184.1 332 P40764 332 100% 0 0

Chromosomal Locations for CCDS 16117.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 71544520 71544924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71545384 71545568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 71545984 71546392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGACTGGAGTCTTTGACAGTCTGGTGGCTGATATGCACTCGACCCAGATCACCGCCTCCAGCACGTACC
ACCAGCACCAGCAGCCCCCGAGCGGTGCGGGCGCCGGCCCTGGCGGCAACAGCAACAGCAGCAGCAGCAA
CAGCAGCCTGCACAAGCCCCAGGAGTCGCCAACCCTCCCGGTGTCCACGGCTACGGACAGCAGCTACTAC
ACCAACCAGCAGCACCCGGCGGGCGGCGGCGGCGGGGGGGCCTCGCCCTACGCGCACATGGGCTCCTACC
AGTACCACGCCAGCGGCCTCAACAATGTCTCCTACTCCGCCAAAAGCAGCTACGACCTGGGCTACACCGC
CGCGTACACCTCCTACGCGCCCTACGGCACCAGTTCGTCTCCGGTCAACAACGAGCCGGACAAGGAAGAC
CTTGAGCCTGAAATCCGAATAGTGAACGGGAAGCCAAAGAAAGTCCGGAAACCACGCACCATCTACTCCA
GTTTCCAGCTGGCGGCCCTTCAACGACGCTTCCAGAAGACCCAGTATCTGGCCCTGCCAGAGCGAGCCGA
GCTGGCGGCGTCCCTGGGCCTCACCCAAACTCAGGTCAAAATCTGGTTCCAGAACCGCCGATCCAAGTTC
AAGAAGATGTGGAAAAGCGGCGAGATACCCACCGAGCAGCACCCTGGAGCCAGCGCTTCTCCTCCTTGTG
CCTCCCCGCCGGTCTCGGCGCCAGCATCCTGGGACTTCGGCGCGCCGCAGCGGATGGCTGGCGGCGGCCC
GGGCAGCGGAGGCGGCGGTGCGGGCAGCTCTGGCTCCAGCCCGAGCAGCGCCGCCTCGGCCTTTCTGGGA
AACTACCCGTGGTACCACCAGGCTTCGGGCTCCGCTTCACACCTGCAGGCCACAGCGCCACTTCTGCATC
CTTCGCAGACTCCGCAGGCGCACCATCACCACCATCACCACCACCACGCAGGCGGGGGCGCCCCGGTGAG
CGCGGGGACGATTTTCTAA

Translation (332 aa):
MTGVFDSLVADMHSTQITASSTYHQHQQPPSGAGAGPGGNSNSSSSNSSLHKPQESPTLPVSTATDSSYY
TNQQHPAGGGGGGASPYAHMGSYQYHASGLNNVSYSAKSSYDLGYTAAYTSYAPYGTSSSPVNNEPDKED
LEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKF
KKMWKSGEIPTEQHPGASASPPCASPPVSAPASWDFGAPQRMAGGGPGSGGGGAGSSGSSPSSAASAFLG
NYPWYHQASGSASHLQATAPLLHPSQTPQAHHHHHHHHHAGGGAPVSAGTIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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