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Report for CCDS3878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3878.1 Public Homo sapiens 5 CMBL 24 110 108 CCDS HistoryNCBI Gene:134147Re-query CCDS DB by CCDS ID:3878.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3878.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296658.4 ENSP00000296658.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296658.4Link to Ensembl Protein Viewer:ENSP00000296658.3Re-query CCDS DB by Nucleotide ID:ENST00000296658Re-query CCDS DB by Protein ID:ENSP00000296658
Original member Current member NCBI NM_138809.4 NP_620164.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138809.4Link to Protein Sequence:NP_620164.1Re-query CCDS DB by Nucleotide ID:NM_138809Re-query CCDS DB by Protein ID:NP_620164Link to BLAST:NP_620164.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620164.1 245 Q96DG6 245 100% 0 0

Chromosomal Locations for CCDS 3878.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 10280453 10280632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10282197 10282288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10286354 10286496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10288422 10288529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10290548 10290762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGCTAACGAAGCTTATCCTTGTCCGTGTGACATTGGCCACAGACTTGAGTATGGAGGGCTAGGCCGTG
AAGTTCAAGTCGAGCACATCAAGGCTTATGTCACCAAATCCCCCGTTGATGCAGGCAAAGCTGTGATTGT
CATTCAAGATATATTTGGCTGGCAGTTGCCCAATACCAGATATATAGCTGACATGATCTCAGGAAATGGA
TACACAACCATTGTTCCAGACTTCTTTGTAGGGCAAGAGCCTTGGGACCCCTCTGGCGACTGGTCTATCT
TCCCTGAGTGGCTGAAAACAAGAAATGCCCAGAAGATCGATAGAGAGATCAGTGCTATCTTGAAGTATCT
GAAACAACAGTGTCATGCCCAGAAAATTGGCATCGTGGGATTCTGCTGGGGTGGAACTGCTGTCCATCAT
TTGATGATGAAATACTCAGAATTCAGGGCAGGGGTGTCCGTCTATGGCATTGTCAAGGATTCTGAAGACA
TTTACAATTTAAAGAACCCCACTTTGTTCATTTTTGCTGAAAATGATGTTGTGATTCCACTCAAGGACGT
ATCTTTGCTGACTCAGAAGTTGAAAGAACACTGCAAAGTTGAATATCAAATTAAAACATTTTCTGGGCAG
ACTCATGGGTTCGTGCATCGGAAGAGAGAAGATTGCTCACCTGCAGACAAGCCCTACATTGACGAGGCCA
GAAGGAATTTAATTGAGTGGCTGAACAAGTACATGTAG

Translation (245 aa):
MANEAYPCPCDIGHRLEYGGLGREVQVEHIKAYVTKSPVDAGKAVIVIQDIFGWQLPNTRYIADMISGNG
YTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGGTAVHH
LMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDVVIPLKDVSLLTQKLKEHCKVEYQIKTFSGQ
THGFVHRKREDCSPADKPYIDEARRNLIEWLNKYM


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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