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Report for CCDS52781.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52781.1 Public Mus musculus 9 Mpzl3 23 108 98 CCDS HistoryNCBI Gene:319742Re-query CCDS DB by CCDS ID:52781.1Re-query CCDS DB by GeneID:319742See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52781.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114664.7 ENSMUSP00000110312.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114664.7Link to Ensembl Protein Viewer:ENSMUSP00000110312.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114664Re-query CCDS DB by Protein ID:ENSMUSP00000110312
Original member Current member NCBI NM_001093749.3 NP_001087218.1 Accepted alive Link to Nucleotide Sequence:NM_001093749.3Link to Protein Sequence:NP_001087218.1Re-query CCDS DB by Nucleotide ID:NM_001093749Re-query CCDS DB by Protein ID:NP_001087218Link to BLAST:NP_001087218.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001087218.1 237 Q3V3F6-1 237 100% 0 0

Chromosomal Locations for CCDS 52781.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 45055243 45055318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45062041 45062207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45066339 45066549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45068207 45068372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45070656 45070719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45074754 45074783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGCAGCTGGCAAGAGGAACAGTAGGAGGCCGTGGCTGCGCTCTCTTTCCACTGCTGAGCATCCTAGTCG
TCCAGGGTGCGCGTATCGTCCTCTCCTTGGAGATAAGTGCCGATGCTCACGTCCGAGGCTATGTGGGAGA
GAAGATCAAGTTGAAATGCACCTTCAAGTCATCTTCAGATGTCACTGACAAGCTGACCATAGACTGGACA
TACCGCCCTCCCAGCAGCAGCCGCACAGAGTCTATTTTTCACTATCAGTCTTTCCAGTACCCGACCACAG
CGGGCACATTCCGAGACCGGATCTCCTGGGCCGGAAATGTCTACAAAGGGGATGCGTCCATCAGTATCAG
CAACCCCACTCTAAAGGACAATGGGACGTTCAGCTGTGCTGTGAAGAACCCTCCAGACGTGTACCACAAT
ATCCCCCTAACAGAGCTCACGGTCACAGAAAGGGGGTTCGGCACCATGCTGTCTTCTGTGGCCCTTCTCT
CCATCCTCGTCTTCGTCCCCTCAGCAGTGGTGGTCATTCTGCTGCTGGTGCGAATGGGGAGGAAGGCAAC
AGGGGTGCAGAAGAGGAGCAGGTCTGGCTATAAGAAGTCTTCCATTGAAGTTTCCGATGACACTGACCAG
GAGGACAGCAATGACTGCATGACGAGGCTTTGTGTCCGCTGTGCAGAGTGTCTGGATTCAGACTACGAAG
AAGAGGCGTACTGA

Translation (237 aa):
MQLARGTVGGRGCALFPLLSILVVQGARIVLSLEISADAHVRGYVGEKIKLKCTFKSSSDVTDKLTIDWT
YRPPSSSRTESIFHYQSFQYPTTAGTFRDRISWAGNVYKGDASISISNPTLKDNGTFSCAVKNPPDVYHN
IPLTELTVTERGFGTMLSSVALLSILVFVPSAVVVILLLVRMGRKATGVQKRSRSGYKKSSIEVSDDTDQ
EDSNDCMTRLCVRCAECLDSDYEEEAY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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