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Report for CCDS19501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19501.1 Public Mus musculus 5 Ephx4 23 108 98 CCDS HistoryNCBI Gene:384214Re-query CCDS DB by CCDS ID:19501.1Re-query CCDS DB by GeneID:384214See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19501.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049146.11 ENSMUSP00000043764.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049146.11Link to Ensembl Protein Viewer:ENSMUSP00000043764.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049146Re-query CCDS DB by Protein ID:ENSMUSP00000043764
Original member Current member NCBI NM_001001804.2 NP_001001804.2 Accepted alive Link to Nucleotide Sequence:NM_001001804.2Link to Protein Sequence:NP_001001804.2Re-query CCDS DB by Nucleotide ID:NM_001001804Re-query CCDS DB by Protein ID:NP_001001804Link to BLAST:NP_001001804.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001804.2 359 Q6IE26 359 100% 0 0

Chromosomal Locations for CCDS 19501.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 107403551 107403775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107406032 107406117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107413016 107413173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107413498 107413626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107419776 107419879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107426800 107426948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107429663 107429891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGCCCCGCCGCGCCCGCCCCGCCTGCTGCCCGCGCTGCGCGCCCTGCTCTACTGGTCCCTGGTGTACG
GCTACTGCGGGCTGTGCGCCTCCGTCCACCTGCTCAAACTTTTGTGGAGCATCGGTAGGGCGCCGGCGCA
GACCTTCCGCCGGGCGGCCCGGGCCAACCCTCCGGCGTGCCTGAACGACCCCTCCTTAGGGACTCACTGC
TACGTGCGCATCAAGGACTCCGGGTTAAGATTTCACTATGTTGCTGCTGGAGAAAGGGGCAAACCGCTCA
TGCTGCTGCTTCATGGATTTCCAGAATTCTGGTATTCTTGGCGCCATCAACTGAGAGAATTTAAAAGCGA
ATACAGGGTTGTTGCATTGGATTTGAGAGGTTATGGAGAGTCTGATGCACCTGCTCATCAAGAGAGTTAC
AAACTGGACTGTCTAATTGCAGACATAAAGGATATTTTGGACTCCTTAGGGTATAGCAAATGTGTCCTGA
TCGGCCATGACTGGGGAGGCATGATTGCCTGGCTGATTGCTGTCTGCTACCCTGAGATGATAATGAAGCT
CATTGTTATTAACTTCCCACATCCAAGTGTATTTACAGAGTATATACTGCGGCATCCTGCCCAGCTGTTC
AGATCCAGCTTTTATTACTTCTTCCAAATACCACGCTTCCCAGAATTTATGTTCTCAATTAATGATTTTA
AGGCTTTGAAACATCTGTTTACCAGTCAGAGTACTGGCATTGGAAGGAAAGGACGCCAGCTGACAACAGA
AGATCTAGAAGCTTACGTTTATGTCTTTTCTCAGCCTGGAGCACTAAGTGGTCCAATTAACCATTATCGA
AACATTTTCAGCTGCCTGCCTCTCAAACATCACATGGTGACCACCCCAACACTGCTTCTGTGGGGAGAGG
AAGATGCGTTTATGGAGGTAGAGATGGCCGAGGTCACAAAGATTTATGTTAAAAACTATTTCAGACTCAC
CATTTTGTCAGAAGGTAGCCACTGGCTTCAGCAAGACCAGCCTGACATAGTGAATGGACTGATATGGGCA
TTCCTGAAGGAAGAAACAAGGAGAGACTGA

Translation (359 aa):
MAPPRPPRLLPALRALLYWSLVYGYCGLCASVHLLKLLWSIGRAPAQTFRRAARANPPACLNDPSLGTHC
YVRIKDSGLRFHYVAAGERGKPLMLLLHGFPEFWYSWRHQLREFKSEYRVVALDLRGYGESDAPAHQESY
KLDCLIADIKDILDSLGYSKCVLIGHDWGGMIAWLIAVCYPEMIMKLIVINFPHPSVFTEYILRHPAQLF
RSSFYYFFQIPRFPEFMFSINDFKALKHLFTSQSTGIGRKGRQLTTEDLEAYVYVFSQPGALSGPINHYR
NIFSCLPLKHHMVTTPTLLLWGEEDAFMEVEMAEVTKIYVKNYFRLTILSEGSHWLQQDQPDIVNGLIWA
FLKEETRRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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