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Report for CCDS26512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26512.1 Public Mus musculus 13 S1pr3 23 108 98 CCDS HistoryNCBI Gene:13610Re-query CCDS DB by CCDS ID:26512.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26512.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087978.4 ENSMUSP00000085293.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087978.4Link to Ensembl Protein Viewer:ENSMUSP00000085293.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087978Re-query CCDS DB by Protein ID:ENSMUSP00000085293
Original member Current member NCBI NM_010101.4 NP_034231.1 Accepted alive Link to Nucleotide Sequence:NM_010101.4Link to Protein Sequence:NP_034231.1Re-query CCDS DB by Nucleotide ID:NM_010101Re-query CCDS DB by Protein ID:NP_034231Link to BLAST:NP_034231.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034231.1 378 Q9Z0U9 378 100% 0 0

Chromosomal Locations for CCDS 26512.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 51418785 51419921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGGCAACCACGCATGCGCAGGGCCACCAGCCAGTCTTGGGAAATGACACTCTCCGGGAACATTACGATT
ACGTGGGGAAACTGGCAGGCAGGCTGCGGGACCCCCCTGAGGGTGGCACCCTCATCACCACCATCCTCTT
CTTGGTCACCTGTAGCTTCATCGTCTTGGAGAACCTGATGGTTTTGATTGCCATCTGGAAAAACAATAAA
TTTCACAACCGCATGTACTTTTTCATCGGCAACTTGGCTCTCTGCGACCTGCTGGCCGGCATAGCATACA
AGGTCAATATTCTTATGTCCGGCAGGAAGACGTTCAGTCTGTCTCCAACAGTGTGGTTCCTCAGGGAGGG
CAGTATGTTCGTAGCCCTGGGCGCATCCACCTGCAGCTTACTGGCCATTGCCATTGAGCGACACCTGACC
ATGATCAAGATGAGGCCATATGATGCCAACAAGAAGCACCGCGTGTTCCTTCTGATTGGGATGTGCTGGC
TAATTGCCTTCTCGCTGGGTGCCCTGCCAATCCTGGGCTGGAACTGCCTGGAGAACTTTCCCGACTGCTC
TACCATCTTGCCCCTCTACTCCAAGAAATACATCGCCTTCCTCATCAGTATCTTCACCGCCATTCTGGTG
ACCATCGTCATCTTGTATGCGCGCATCTACTGCCTGGTCAAGTCCAGCAGCCGCAGGGTGGCCAACCACA
ACTCTGAGAGATCCATGGCCCTTCTGCGGACCGTAGTGATTGTGGTGAGTGTGTTCATTGCCTGTTGGTC
CCCACTTTTTATCCTCTTCCTCATCGACGTGGCCTGCAGGGCAAAGGAGTGCTCCATCCTCTTCAAGAGT
CAGTGGTTCATCATGCTGGCTGTCCTCAACTCGGCCATGAACCCTGTCATCTACACGCTGGCCAGCAAAG
AGATGAGGCGCGCCTTCTTCCGGTTGGTGTGCGGCTGTCTAGTCAAGGGCAAGGGGACCCAGGCCTCACC
CATGCAGCCTGCCCTCGACCCAAGCAGAAGTAAGTCAAGCTCCAGTAACAACAGCAGCCACTCTCCGAAG
GTCAAGGAAGACCTGCCCCGCGTGGCTACTTCTTCCTGCATCATTGACAAAAACAGGTCGTTTCAGAACG
GGGTCCTCTGCAAGTGA

Translation (378 aa):
MATTHAQGHQPVLGNDTLREHYDYVGKLAGRLRDPPEGGTLITTILFLVTCSFIVLENLMVLIAIWKNNK
FHNRMYFFIGNLALCDLLAGIAYKVNILMSGRKTFSLSPTVWFLREGSMFVALGASTCSLLAIAIERHLT
MIKMRPYDANKKHRVFLLIGMCWLIAFSLGALPILGWNCLENFPDCSTILPLYSKKYIAFLISIFTAILV
TIVILYARIYCLVKSSSRRVANHNSERSMALLRTVVIVVSVFIACWSPLFILFLIDVACRAKECSILFKS
QWFIMLAVLNSAMNPVIYTLASKEMRRAFFRLVCGCLVKGKGTQASPMQPALDPSRSKSSSSNNSSHSPK
VKEDLPRVATSSCIIDKNRSFQNGVLCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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