NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8987.1 Public Homo sapiens 12 CPM 24 110 108 CCDS HistoryNCBI Gene:1368Re-query CCDS DB by CCDS ID:8987.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8987.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338356.7 ENSP00000339157.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338356.7Link to Ensembl Protein Viewer:ENSP00000339157.3Re-query CCDS DB by Nucleotide ID:ENST00000338356Re-query CCDS DB by Protein ID:ENSP00000339157
Original member Current member EBI ENST00000546373.5 ENSP00000447255.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546373.5Link to Ensembl Protein Viewer:ENSP00000447255.1Re-query CCDS DB by Nucleotide ID:ENST00000546373Re-query CCDS DB by Protein ID:ENSP00000447255
Original member Current member EBI ENST00000551568.6 ENSP00000448517.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000551568.6Link to Ensembl Protein Viewer:ENSP00000448517.1Re-query CCDS DB by Nucleotide ID:ENST00000551568Re-query CCDS DB by Protein ID:ENSP00000448517
Original member NCBI NM_001005502.2 NP_001005502.1 Updated not alive Link to Nucleotide Sequence:NM_001005502.2Link to Protein Sequence:NP_001005502.1Re-query CCDS DB by Nucleotide ID:NM_001005502Re-query CCDS DB by Protein ID:NP_001005502
Current member NCBI NM_001005502.3 NP_001005502.1 Accepted alive Link to Nucleotide Sequence:NM_001005502.3Link to Protein Sequence:NP_001005502.1Re-query CCDS DB by Nucleotide ID:NM_001005502Re-query CCDS DB by Protein ID:NP_001005502Link to BLAST:NP_001005502.1
Original member Current member NCBI NM_001874.5 NP_001865.1 Accepted alive Link to Nucleotide Sequence:NM_001874.5Link to Protein Sequence:NP_001865.1Re-query CCDS DB by Nucleotide ID:NM_001874Re-query CCDS DB by Protein ID:NP_001865Link to BLAST:NP_001865.1
Original member Current member NCBI NM_198320.5 NP_938079.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198320.5Link to Protein Sequence:NP_938079.1Re-query CCDS DB by Nucleotide ID:NM_198320Re-query CCDS DB by Protein ID:NP_938079Link to BLAST:NP_938079.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005502.1 443 P14384 443 100% 0 0
NP_001865.1 443 P14384 443 100% 0 0
NP_938079.1 443 P14384 443 100% 0 0

Chromosomal Locations for CCDS 8987.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 68856437 68856679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68858923 68859071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68866896 68867048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68869325 68869495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68870215 68870399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68871784 68871956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68885792 68885889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68932678 68932837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGGACTTCCCGTGCCTCTGGCTAGGGCTGTTGCTGCCTTTGGTAGCTGCGCTGGATTTCAACTACCACC
GCCAGGAAGGGATGGAAGCGTTTTTGAAGACTGTTGCCCAAAACTACAGTTCTGTCACTCACTTACACAG
TATTGGGAAATCTGTGAAAGGTAGAAACCTGTGGGTTCTTGTTGTGGGGCGGTTTCCAAAGGAACACAGA
ATTGGGATTCCAGAGTTCAAATACGTGGCAAATATGCATGGAGATGAGACTGTTGGGCGGGAGCTGCTGC
TCCATCTGATTGACTATCTCGTAACCAGTGATGGCAAAGACCCTGAAATCACAAATCTGATCAATAGTAC
CCGGATACACATCATGCCTTCCATGAACCCAGATGGATTTGAAGCCGTCAAAAAGCCTGACTGTTATTAC
AGCATCGGAAGGGAAAATTATAACCAGTATGACTTGAATCGAAATTTCCCCGATGCTTTTGAATATAATA
ATGTCTCAAGGCAGCCTGAAACTGTGGCAGTCATGAAGTGGCTGAAAACAGAGACGTTTGTCCTCTCTGC
AAACCTCCATGGTGGTGCCCTCGTGGCCAGTTACCCATTTGATAATGGTGTTCAAGCAACTGGGGCATTA
TACTCCCGAAGCTTAACGCCTGATGATGATGTTTTTCAATATCTTGCACATACCTATGCTTCAAGAAATC
CCAACATGAAGAAAGGAGACGAGTGTAAAAACAAAATGAACTTTCCTAATGGTGTTACAAATGGATACTC
TTGGTATCCACTCCAAGGTGGAATGCAAGATTACAACTACATCTGGGCCCAGTGTTTTGAAATTACGTTG
GAGCTGTCATGCTGTAAATATCCTCGTGAGGAGAAGCTTCCATCCTTTTGGAATAATAACAAAGCCTCAT
TAATTGAATATATAAAGCAGGTGCACCTAGGTGTAAAGGGTCAAGTTTTTGATCAGAATGGAAATCCATT
ACCCAATGTAATTGTGGAAGTCCAAGACAGAAAACATATCTGCCCCTATAGAACCAACAAATATGGAGAG
TATTATCTCCTTCTCTTGCCTGGGTCTTATATAATAAATGTTACAGTCCCTGGACATGATCCACACATCA
CAAAGGTGATTATTCCGGAGAAATCCCAGAACTTCAGTGCTCTTAAAAAGGATATTCTACTTCCATTCCA
AGGGCAATTGGATTCTATCCCAGTATCAAATCCTTCATGCCCAATGATTCCTCTATACAGAAATTTGCCA
GACCACTCAGCTGCAACAAAGCCTAGTTTGTTCTTATTTTTAGTGAGTCTTTTGCACATATTCTTCAAAT
AA

Translation (443 aa):
MDFPCLWLGLLLPLVAALDFNYHRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRFPKEHR
IGIPEFKYVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPDCYY
SIGRENYNQYDLNRNFPDAFEYNNVSRQPETVAVMKWLKTETFVLSANLHGGALVASYPFDNGVQATGAL
YSRSLTPDDDVFQYLAHTYASRNPNMKKGDECKNKMNFPNGVTNGYSWYPLQGGMQDYNYIWAQCFEITL
ELSCCKYPREEKLPSFWNNNKASLIEYIKQVHLGVKGQVFDQNGNPLPNVIVEVQDRKHICPYRTNKYGE
YYLLLLPGSYIINVTVPGHDPHITKVIIPEKSQNFSALKKDILLPFQGQLDSIPVSNPSCPMIPLYRNLP
DHSAATKPSLFLFLVSLLHIFFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH