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Report for CCDS8987.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
8987.1 |
Public |
Homo sapiens |
12 |
CPM |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:1368](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:8987.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 12 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 8987.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000338356.7 |
ENSP00000339157.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000338356.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000339157.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000338356](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000339157](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000546373.5 |
ENSP00000447255.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000546373.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000447255.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000546373](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000447255](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000551568.6 |
ENSP00000448517.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000551568.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000448517.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000551568](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000448517](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001005502.2 |
NP_001005502.1 |
|
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001005502.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001005502.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001005502](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001005502](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001005502.3 |
NP_001005502.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001005502.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001005502.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001005502](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001005502](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001005502.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001874.5 |
NP_001865.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001874.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001865.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001874](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001865](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001865.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_198320.5 |
NP_938079.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_198320.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_938079.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_198320](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_938079](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_938079.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 8987.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1332 nt): ATGGACTTCCCGTGCCTCTGGCTAGGGCTGTTGCTGCCTTTGGTAGCTGCGCTGGATTTCAACTACCACC GCCAGGAAGGGATGGAAGCGTTTTTGAAGACTGTTGCCCAAAACTACAGTTCTGTCACTCACTTACACAG TATTGGGAAATCTGTGAAAGGTAGAAACCTGTGGGTTCTTGTTGTGGGGCGGTTTCCAAAGGAACACAGA ATTGGGATTCCAGAGTTCAAATACGTGGCAAATATGCATGGAGATGAGACTGTTGGGCGGGAGCTGCTGC TCCATCTGATTGACTATCTCGTAACCAGTGATGGCAAAGACCCTGAAATCACAAATCTGATCAATAGTAC CCGGATACACATCATGCCTTCCATGAACCCAGATGGATTTGAAGCCGTCAAAAAGCCTGACTGTTATTAC AGCATCGGAAGGGAAAATTATAACCAGTATGACTTGAATCGAAATTTCCCCGATGCTTTTGAATATAATA ATGTCTCAAGGCAGCCTGAAACTGTGGCAGTCATGAAGTGGCTGAAAACAGAGACGTTTGTCCTCTCTGC AAACCTCCATGGTGGTGCCCTCGTGGCCAGTTACCCATTTGATAATGGTGTTCAAGCAACTGGGGCATTA TACTCCCGAAGCTTAACGCCTGATGATGATGTTTTTCAATATCTTGCACATACCTATGCTTCAAGAAATC CCAACATGAAGAAAGGAGACGAGTGTAAAAACAAAATGAACTTTCCTAATGGTGTTACAAATGGATACTC TTGGTATCCACTCCAAGGTGGAATGCAAGATTACAACTACATCTGGGCCCAGTGTTTTGAAATTACGTTG GAGCTGTCATGCTGTAAATATCCTCGTGAGGAGAAGCTTCCATCCTTTTGGAATAATAACAAAGCCTCAT TAATTGAATATATAAAGCAGGTGCACCTAGGTGTAAAGGGTCAAGTTTTTGATCAGAATGGAAATCCATT ACCCAATGTAATTGTGGAAGTCCAAGACAGAAAACATATCTGCCCCTATAGAACCAACAAATATGGAGAG TATTATCTCCTTCTCTTGCCTGGGTCTTATATAATAAATGTTACAGTCCCTGGACATGATCCACACATCA CAAAGGTGATTATTCCGGAGAAATCCCAGAACTTCAGTGCTCTTAAAAAGGATATTCTACTTCCATTCCA AGGGCAATTGGATTCTATCCCAGTATCAAATCCTTCATGCCCAATGATTCCTCTATACAGAAATTTGCCA GACCACTCAGCTGCAACAAAGCCTAGTTTGTTCTTATTTTTAGTGAGTCTTTTGCACATATTCTTCAAAT AA
Translation (443 aa): MDFPCLWLGLLLPLVAALDFNYHRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRFPKEHR IGIPEFKYVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPDCYY SIGRENYNQYDLNRNFPDAFEYNNVSRQPETVAVMKWLKTETFVLSANLHGGALVASYPFDNGVQATGAL YSRSLTPDDDVFQYLAHTYASRNPNMKKGDECKNKMNFPNGVTNGYSWYPLQGGMQDYNYIWAQCFEITL ELSCCKYPREEKLPSFWNNNKASLIEYIKQVHLGVKGQVFDQNGNPLPNVIVEVQDRKHICPYRTNKYGE YYLLLLPGSYIINVTVPGHDPHITKVIIPEKSQNFSALKKDILLPFQGQLDSIPVSNPSCPMIPLYRNLP DHSAATKPSLFLFLVSLLHIFFK
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