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Report for CCDS18890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18890.1 Public Mus musculus 4 Oog4 23 108 98 CCDS HistoryNCBI Gene:242737Re-query CCDS DB by CCDS ID:18890.1Re-query CCDS DB by GeneID:242737See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061277.10 ENSMUSP00000052217.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061277.10Link to Ensembl Protein Viewer:ENSMUSP00000052217.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000061277Re-query CCDS DB by Protein ID:ENSMUSP00000052217
Original member Current member NCBI NM_173773.2 NP_776134.1 Accepted alive Link to Nucleotide Sequence:NM_173773.2Link to Protein Sequence:NP_776134.1Re-query CCDS DB by Nucleotide ID:NM_173773Re-query CCDS DB by Protein ID:NP_776134Link to BLAST:NP_776134.1

Chromosomal Locations for CCDS 18890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 143437451 143438033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143438650 143439234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143439892 143440016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGATACCTGTATGGCCCTTCCCATACCTTTCTTTAGGAAAGCTGATAAAGAATTGCAACCTGGAGACTT
TGAAGGCTATGCTTGAGGGAGTGGATATACTGCTTGCACAAAATGATCGCTCCAGTAGATGCAAACTCAG
AGTGCTCGATTTAAGGAATGAATACCATACTTTGTGGAGAATATGGGGTGGATCCTATGAAGGTAGAGGC
TTGCCAGAGTTCATGACACAGCAGCAGCCAATGGAGAACTGTCCTGACTGTGGGGTGAATAAAGAATTGA
AGGTGACAACTGACCTCAACCTCGTGGATGGTGGACTTGATGAATCTGCCACATACTTGTTGCAGTGGGC
CCAGCAGAAAAAAGATTCCATTCATCTATGCTGTACGATGTTGAGAATTCATAGCTTACCCAAAGACATA
TTCAGAGATATCCTCAAAATTGTAAATACAGGCTGTATACAGGAGCTTCACTTGAAGGAATTGTACACAG
AAGAGTTGGTTTTTCTTATACCTTACCTGAGAGAAATGAACAATCTTCTTACATTCATGCTAAGTAGCAT
CAGAGAAACCTGCAGAATGGATAACTCGACAAGGCTTGATGAAGAGAATATAAGCAGGTTTATTTCTCGC
CTTCCCAAATTCCACTGTCTGCAGAATCTCTATGTAAATGATATCACCCTTCTAGGAAACAACCTGAAAG
ACTTCCTCAGGTGCCTGGGGAAGCCCTTGGAGACTCTTTGCCTCACTTCTTGTGACTTATCACAGTCAGA
CTTGGATTACCTGCCCTGTTGCCAGAATACTTCTGCACTCAAACGTCTGAACCTGACTGCTACAAGTTTG
CGTGGTTTAGTCTTTCATCCTCTTGGAGTTCTCCTTGAGAGTGTTAGAGGTACACTGCAATCCCTGGAAT
TAGAGTTGTGTTTTATGGAGGACTCTCAGATCAGTGCCATTTTGCCTGCCCTAAGCCAATGTTCCCATCT
CACAAAGGTCAATTTCTATGATAATGAACTCTCTCTGCCTATCCTGAGACAACTTCTATACCACACAGCC
AACCTGAGCCAGCTGACCTATGAGGTATACCCTGCCCCTCTAGAGTGCTATAATGACATGAATATAATAC
TAACACATAAGTTAGAAAATTTTTGTCCTGAGCTTCTGGACATAATCAGGGCCAATAGGCAGCCCAACAG
AGTCACATTTGCTACATCCAAATGTTTAATCTGTTGTGGGTCCTACGTTTATGATCTGGAGACCCAGAGC
TGCCTATACCAGAAAGATCTACTGGAAGATTGA

Translation (430 aa):
MIPVWPFPYLSLGKLIKNCNLETLKAMLEGVDILLAQNDRSSRCKLRVLDLRNEYHTLWRIWGGSYEGRG
LPEFMTQQQPMENCPDCGVNKELKVTTDLNLVDGGLDESATYLLQWAQQKKDSIHLCCTMLRIHSLPKDI
FRDILKIVNTGCIQELHLKELYTEELVFLIPYLREMNNLLTFMLSSIRETCRMDNSTRLDEENISRFISR
LPKFHCLQNLYVNDITLLGNNLKDFLRCLGKPLETLCLTSCDLSQSDLDYLPCCQNTSALKRLNLTATSL
RGLVFHPLGVLLESVRGTLQSLELELCFMEDSQISAILPALSQCSHLTKVNFYDNELSLPILRQLLYHTA
NLSQLTYEVYPAPLECYNDMNIILTHKLENFCPELLDIIRANRQPNRVTFATSKCLICCGSYVYDLETQS
CLYQKDLLED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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