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Report for CCDS26761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26761.1 Public Mus musculus 13 Ercc8 23 108 98 CCDS HistoryNCBI Gene:71991Re-query CCDS DB by CCDS ID:26761.1Re-query CCDS DB by GeneID:71991See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26761.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054835.14 ENSMUSP00000059211.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054835.14Link to Ensembl Protein Viewer:ENSMUSP00000059211.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000054835Re-query CCDS DB by Protein ID:ENSMUSP00000059211
Original member Current member NCBI NM_028042.4 NP_082318.2 Accepted alive Link to Nucleotide Sequence:NM_028042.4Link to Protein Sequence:NP_082318.2Re-query CCDS DB by Nucleotide ID:NM_028042Re-query CCDS DB by Protein ID:NP_082318Link to BLAST:NP_082318.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082318.2 397 Q8CFD5 397 100% 0 0

Chromosomal Locations for CCDS 26761.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 108158794 108158870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 108160635 108160730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 108166390 108166491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 108169368 108169491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 108172702 108172783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 108173992 108174060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 108175554 108175620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 108177617 108177717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 108178572 108178696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 108183725 108183922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 108187197 108187280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 108194056 108194124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGTTGAGCTTTTTGTCCGCTCGACAGTCGGGTTTGGAGGACCCTCTTCGCTTGCGTAGAGCGCAGTCCA
CACGGAGGGTCCTGGGGCTGGAGTTAAACAAAGACAGGGATGTGGAAAGAATCCATGGCAGTGGGGTTAA
CACCCTCGACATTGAGCCCGTTGAAGGAAGATACATGTTGTCAGGTGGCTCCGATGGCGTGGTTGTACTC
TATGACCTTGAGAACGCCAGCAGACAGCCCCATTACACATGTAAAGCAGTGTGTTCCGTTGGCAGAAGCC
ATCCCGATGTTCACAAATACAGCGTGGAGACTGTTCAGTGGTATCCTCATGACACTGGCATGTTCACATC
CAGCTCATTTGATAAAACTCTGAAAGTGTGGGATACAAACACATTGCAGGCTGCAGATGTGTTTAATTTT
GAGGAAACAGTTTACAGTCATCACATGTCCCCAGCAGCCACCAAGCACTGTCTGGTAGCAGTTGGAACAA
GAGGACCCAAGGTACAACTTTGTGACTTAAAGTCTGGATCCTGTTCTCACATTCTACAGGGTCACAGACA
GGAAATCTTGGCAGTTTCCTGGTCACCACGCCATGACTATATCTTGGCAACAGCAAGTGCTGACAGTAGA
GTAAAATTATGGGATGTGAGAAGAGCGTCAGGATGCTTGCTTACTCTTGACCAGCATAATGGGAAAAAGT
CACAAGCTGCTGAATCAGCAAACACTGCTCACAATGGGAAAGTTAACGGCTTATGTTTTACAAGTGACGG
CCTTCACCTGCTCACCATTGGCACAGACAACCGAATGCGCCTCTGGAATAGCTCCAGCGGGGACAACACC
CTGGTGAACTATGGGAAGGTGTGTAATGACAGCAGGAAAGGGCTGCAGTTCGCTGTCTCCTGTGGCTGCA
GCTCAGAGTTTGTGTTTGTTCCCCACGGCAGCACCATCGCTGTGTACGCAGTCCACTCGGGAGAGCGGCT
CGCCATGCTCAAGGGACATTACAAAAGCGTCGACTGCTGTGTGTTCCAGCCTAATTTCCAGGAACTTTAC
AGTGGAAGCAGGGACTGCAATATTCTTGCTTGGGTACCACCTTCCTATGAGCCAGTTCCTGATGATGACG
ATGAAGCTCCAGCCAAATCCCAGTTAAACCCAGCATTCGCGGACGCCTGGAGCAGCAGTGACGAGGATGG
GTGA

Translation (397 aa):
MLSFLSARQSGLEDPLRLRRAQSTRRVLGLELNKDRDVERIHGSGVNTLDIEPVEGRYMLSGGSDGVVVL
YDLENASRQPHYTCKAVCSVGRSHPDVHKYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQAADVFNF
EETVYSHHMSPAATKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRHDYILATASADSR
VKLWDVRRASGCLLTLDQHNGKKSQAAESANTAHNGKVNGLCFTSDGLHLLTIGTDNRMRLWNSSSGDNT
LVNYGKVCNDSRKGLQFAVSCGCSSEFVFVPHGSTIAVYAVHSGERLAMLKGHYKSVDCCVFQPNFQELY
SGSRDCNILAWVPPSYEPVPDDDDEAPAKSQLNPAFADAWSSSDEDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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