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Report for CCDS6388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6388.1 Public Homo sapiens 8 LYPD2 24 110 108 CCDS HistoryNCBI Gene:137797Re-query CCDS DB by CCDS ID:6388.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6388.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359228.4 ENSP00000352163.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359228.4Link to Ensembl Protein Viewer:ENSP00000352163.3Re-query CCDS DB by Nucleotide ID:ENST00000359228Re-query CCDS DB by Protein ID:ENSP00000352163
Original member Current member NCBI NM_205545.3 NP_991108.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_205545.3Link to Protein Sequence:NP_991108.1Re-query CCDS DB by Nucleotide ID:NM_205545Re-query CCDS DB by Protein ID:NP_991108Link to BLAST:NP_991108.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_991108.1 125 Q6UXB3 125 100% 0 0

Chromosomal Locations for CCDS 6388.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 142750283 142750482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 142751051 142751170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 142752394 142752451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGCGGGGGACGCGGCTGGCGCTCCTGGCGCTGGTGCTGGCTGCCTGCGGAGAGCTGGCGCCGGCCCTGC
GCTGCTACGTCTGTCCGGAGCCCACAGGAGTGTCGGACTGTGTCACCATCGCCACCTGCACCACCAACGA
AACCATGTGCAAGACCACACTCTACTCCCGGGAGATAGTGTACCCCTTCCAGGGGGACTCCACGGTGACC
AAGTCCTGTGCCAGCAAGTGTAAGCCCTCGGATGTGGATGGCATCGGCCAGACCCTGCCCGTGTCCTGCT
GCAATACTGAGCTGTGCAATGTAGACGGGGCGCCCGCTCTGAACAGCCTCCACTGCGGGGCCCTCACGCT
CCTCCCACTCTTGAGCCTCCGACTGTAG

Translation (125 aa):
MRGTRLALLALVLAACGELAPALRCYVCPEPTGVSDCVTIATCTTNETMCKTTLYSREIVYPFQGDSTVT
KSCASKCKPSDVDGIGQTLPVSCCNTELCNVDGAPALNSLHCGALTLLPLLSLRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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