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Report for CCDS28327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28327.1 Public Mus musculus 16 Ifngr2 23 108 98 CCDS HistoryNCBI Gene:15980Re-query CCDS DB by CCDS ID:28327.1Re-query CCDS DB by GeneID:15980See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28327.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023687.8 ENSMUSP00000023687.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023687.8Link to Ensembl Protein Viewer:ENSMUSP00000023687.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023687Re-query CCDS DB by Protein ID:ENSMUSP00000023687
Original member Current member NCBI NM_008338.4 NP_032364.1 Accepted alive Link to Nucleotide Sequence:NM_008338.4Link to Protein Sequence:NP_032364.1Re-query CCDS DB by Nucleotide ID:NM_008338Re-query CCDS DB by Protein ID:NP_032364Link to BLAST:NP_032364.1

Chromosomal Locations for CCDS 28327.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 91547163 91547232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91554948 91555080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91557885 91558078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91559977 91560125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91560545 91560704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91561620 91561777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91562871 91563005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGCGGCCTTTGCCACTGTGGCTGCCGTCGCTGCTGCTCTGTGGGCTCGGTGCCGCGGCGTCCTCGCCAG
ACTCGTTTTCCCAGCTTGCGGCCCCTCTGAACCCAAGGCTTCACCTGTACAATGATGAGCAGATTCTAAC
TTGGGAGCCGTCACCTTCCAGCAATGACCCAAGACCAGTGGTCTACCAGGTGGAATATAGCTTCATCGAT
GGCTCTTGGCATAGGTTGCTGGAGCCGAACTGTACGGACATCACAGAGACAAAGTGTGACTTAACAGGAG
GCGGCCGCTTGAAGCTTTTCCCACACCCATTCACAGTCTTCCTGCGGGTGCGAGCCAAGCGAGGGAACCT
CACTTCCAAGTGGGTGGGGCTGGAGCCATTTCAACACTATGAGAATGTTACTGTTGGACCTCCGAAAAAC
ATCTCGGTGACCCCAGGAAAAGGTTCCCTCGTCATACACTTCTCCCCTCCCTTTGATGTGTTCCACGGGG
CAACTTTTCAGTATCTTGTCCACTACTGGGAAAAGTCAGAAACCCAACAGGAACAGGTTGAAGGCCCTTT
CAAGAGCAACTCCATTGTGCTGGGCAATCTGAAGCCATACAGAGTATATTGTTTACAAACTGAGGCACAA
CTGATTTTGAAAAACAAAAAAATCCGACCACATGGGCTCTTGAGCAATGTATCCTGTCACGAAACAACAG
CAAATGCCTCCGCCAGGCTGCAGCAAGTCATCCTGATTCCGTTGGGCATCTTCGCATTGCTGCTCGGCCT
GACGGGCGCCTGCTTCACCCTGTTCCTCAAATACCAAAGCCGAGTGAAGTACTGGTTTCAGGCTCCGCCA
AACATCCCGGAACAAATCGAAGAGTATCTAAAGGACCCAGACCAATTCATCTTAGAGGTCTTGGACAAGG
ACGGTTCACCGAAGGAGGACTCCTGGGACTCCGTGTCAATTATTTCTTCTCCAGAAAAGGAGCGAGATGA
TGTGCTCCAAACACCGTGA

Translation (332 aa):
MRPLPLWLPSLLLCGLGAAASSPDSFSQLAAPLNPRLHLYNDEQILTWEPSPSSNDPRPVVYQVEYSFID
GSWHRLLEPNCTDITETKCDLTGGGRLKLFPHPFTVFLRVRAKRGNLTSKWVGLEPFQHYENVTVGPPKN
ISVTPGKGSLVIHFSPPFDVFHGATFQYLVHYWEKSETQQEQVEGPFKSNSIVLGNLKPYRVYCLQTEAQ
LILKNKKIRPHGLLSNVSCHETTANASARLQQVILIPLGIFALLLGLTGACFTLFLKYQSRVKYWFQAPP
NIPEQIEEYLKDPDQFILEVLDKDGSPKEDSWDSVSIISSPEKERDDVLQTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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