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Report for CCDS92124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92124.1 Public Homo sapiens 16 PDZD9 24 110 108 CCDS HistoryNCBI Gene:255762Re-query CCDS DB by CCDS ID:92124.1Re-query CCDS DB by GeneID:255762See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92124.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424898.3 ENSP00000400514.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000424898.3Link to Ensembl Protein Viewer:ENSP00000400514.2Re-query CCDS DB by Nucleotide ID:ENST00000424898Re-query CCDS DB by Protein ID:ENSP00000400514
Original member Current member NCBI NM_001363519.1 NP_001350448.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001363519.1Link to Protein Sequence:NP_001350448.1Re-query CCDS DB by Nucleotide ID:NM_001363519Re-query CCDS DB by Protein ID:NP_001350448Link to BLAST:NP_001350448.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350448.1 264 Q8IXQ8-1 264 100% 0 0

Chromosomal Locations for CCDS 92124.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 21984267 21984660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21988602 21988791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21996322 21996501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22001017 22001047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGCAGAAGGCCTCCCACAAAAACAAAAAAGAAAGAGGAGTCAGCAACAAGGTCAAAACATCTGTACACA
ACTTGAGCAAAACACAGCAGACCAAACTCACTGTGGGTAGCCTGGGATTAGGCCTCATCATCATCCAGCA
TGGACCCTACCTCCAGATCACCCACCTCATCAGGAAGGGGGCTGCAGCCAACGACGGGAAACTCCAGCCA
GGTGATGTTCTGATTAGTGTTGGCCATGCCAATGTGTTAGGATATACTCTTCGAGAATTTTTACAGCTTT
TGCAACATATCACTATTGGAACAGTGCTACAAATCAAGGTTTACCGAGATTTTATTAACATTCCTGAAGA
ATGGCAAGAAATATATGATTTAATCCCTGAGGCCAAATTCCCAGTAACAAGCACACCAAAGAAAATTGAG
CTGGCAAAAGATGAATCTTTCACAAGCAGTGATGATAATGAAAATGTAGATTTAGATAAAAGACTTCAAT
ATTATAGATATCCGTGGTCAACTGTGCATCACCCTGCAAGGAGACCAATATCCATCTCCAGAGACTGGCA
TGGATATAAGAAGAAGAACCATACTATTAGTGTAGGAAAAGACATTAATTGTGACGTGATGATTCACAGA
GACGACAAGAAAGAAGTGAGGGCCCCTTCTCCATACTGGATAATGGTGAAGCAAGACAATGAAAGCTCTT
CCTCCTCTACCTCCTCTACCTCAGATGCATTTTGGCTGGAAGATTGTGCCCAAGTTGAAGAGGGTAAAGC
CCAACTGGTATCAAAGGTTGGTTAG

Translation (264 aa):
MQKASHKNKKERGVSNKVKTSVHNLSKTQQTKLTVGSLGLGLIIIQHGPYLQITHLIRKGAAANDGKLQP
GDVLISVGHANVLGYTLREFLQLLQHITIGTVLQIKVYRDFINIPEEWQEIYDLIPEAKFPVTSTPKKIE
LAKDESFTSSDDNENVDLDKRLQYYRYPWSTVHHPARRPISISRDWHGYKKKNHTISVGKDINCDVMIHR
DDKKEVRAPSPYWIMVKQDNESSSSSTSSTSDAFWLEDCAQVEEGKAQLVSKVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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