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Report for CCDS21513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21513.1 Public Mus musculus 7 Clpb 23 108 98 CCDS HistoryNCBI Gene:20480Re-query CCDS DB by CCDS ID:21513.1Re-query CCDS DB by GeneID:20480See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21513.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001884.13 ENSMUSP00000001884.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001884.13Link to Ensembl Protein Viewer:ENSMUSP00000001884.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001884Re-query CCDS DB by Protein ID:ENSMUSP00000001884
Original member Current member NCBI NM_009191.4 NP_033217.1 Accepted alive Link to Nucleotide Sequence:NM_009191.4Link to Protein Sequence:NP_033217.1Re-query CCDS DB by Nucleotide ID:NM_009191Re-query CCDS DB by Protein ID:NP_033217Link to BLAST:NP_033217.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033217.1 677 Q60649 677 100% 0 0

Chromosomal Locations for CCDS 21513.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 101663811 101664213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101667248 101667299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101687288 101687374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101706483 101706586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101722705 101722833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101751234 101751331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101763581 101763695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101773080 101773157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101774192 101774247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101778572 101778616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101779202 101779363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101785328 101785484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101786100 101786173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101786287 101786406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101786646 101786750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101787505 101787753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGATGTTGTCCGCGGTGTTGAGGAGAACCACGCCAGCGCCTCGGCTCTTCCTAGGGTTAATCAAATCTC
CATCTCTCCAAAGCCGGGGAGGTGCTTACGGCCGTGGCGTTGTCACCGGAGACCGCGGGGAGCCGCAGCG
GTTGAGAGCTGCCGCTTGGGTGCGCCCTGGAGCATCTTCTACCTTCGTCCCCGGACGGGGGGCAGCCACC
TGGGGGCGCCGTGGAGAACGCACCGAGATCCCATACCTGACTGCCGCCTCGTCGGAACGCGGTCCTAGCC
CCGAAGAAACACTCCCGGGACAAGACAGCTGGAATGGGGTCCCCAACAAGACGGGTCTGGGCATGTGGGC
CTTGGCCATGGCGCTGGTGGTTCAGTGCTACAGCAAGAATCCATCCAACAAGGATGCAGCTCTAATGGAA
GCTGCCCGGGCCAATAACGTGCAGGAAGTCAGAAGGCTGTTATCAGAAGGTGCAGATGTCAATGCAAGAC
ACAAACTTGGCTGGACAGCACTGATGGTGGCATCCATCAGCCACAATGAGAGTGTGGTGCAGGTCCTGCT
TGCTGCTGGAGCTGACCCAAACCTTGGGGATGAGTTCAGCAGTGTCTACAAGACTGCCAATGAACAGGGA
GTCCATTCTCTGGAAGTCCTAGTCACTCGAGAGGATGACTTCAACAACCGGCTAAATCACCGTGCTAGCT
TCAAAGGCTGCACAGCCCTGCACTATGCTGTCCTGGCCGATGACTACAGCATCGTCAAGGAGCTGCTGGA
CAGAGGAGCCAACCCCCTTCAGAGGAATGAGATGGGACACACACCCCTGGATTATGCCCGGGAAGGGGAG
GTTATGAAGCTTCTGAAAACTTCTGAGACCAAGTACATGGAGAAGCAGAGGAAGCGGGAGGCAGAGGAGC
GGCGCCGCTTCCCACTGGAGCAGCGACTGAAGGAGCACATCATTGGCCAGGAGAGTGCCATCGCCACCGT
CGGTGCTGCGATCCGGAGGAAGGAGAACGGCTGGTACGATGAGGAGCACCCTCTAGTCTTCCTCTTCTTG
GGATCGTCTGGAATAGGGAAAACCGAGCTGGCCAAGCAGACAGCAAAGTATATGCACAAAGATGCCAAAA
AGGGCTTCATCCGGCTCGACATGTCTGAGTTCCAGGAGCGACATGAGGTAGCCAAGTTTATCGGTTCTCC
ACCAGGCTACATCGGCCATGAAGAGGGTGGCCAGCTGACCAAGAAACTGAAACAGTGCCCAAATGCAGTA
GTCCTCTTTGATGAGGTGGACAAGGCCCATCCAGATGTGCTCACCATCATGCTGCAGCTGTTTGATGAGG
GCCGCCTGACAGATGGCAAAGGGAAGACCATTGACTGCAAGGATGCCATCTTCATCATGACTTCCAATGT
AGCCAGTGATGAGATCGCCCAGCATGCATTGCAGCTCAGACAGGAAGCTTTGGAGATGAGCCGAAATCGA
ATCGCTGAAAACCTTGGGGATGTCCAGATGAGTGACAAGATCACCATCTCCAAGAACTTTAAAGAGAATG
TGATCCGACCCATCTTGAAAGCTCACTTCCGGAGAGACGAGTTTCTGGGACGGATCAATGAGATCGTCTA
CTTCCTCCCTTTCTGCCACTCAGAGCTCATCCAGCTGGTCAACAAGGAACTGAACTTCTGGGCCAAGAGA
GCCAAGCAGAGGCACAACATCACACTACTGTGGGACCGCGAGGTGGCAGATGTGTTGGTTGATGGCTACA
ACGTCCACTATGGTGCCCGCTCCATTAAGCATGAGGTAGAGCGGCGTGTGGTAAACCAACTGGCGGCAGC
CTATGAGCAGGACCTGCTACCAGGGGGTTGCACCCTGCGTATCACTGTGGAGGATTCGGACAAGCACCTC
CTCAAGAGCCCTGAGCTGCCCTCACCCCAGGCTGAGAAGCGTCCACCTACATTGCGACTGGAGATCATTG
ATAAGGACAGCAAGACCCGCAAACTGGACATCCAGGCACCACTCCACCCTGAGAAGGTGTGCTACACCAT
CTAG

Translation (677 aa):
MMLSAVLRRTTPAPRLFLGLIKSPSLQSRGGAYGRGVVTGDRGEPQRLRAAAWVRPGASSTFVPGRGAAT
WGRRGERTEIPYLTAASSERGPSPEETLPGQDSWNGVPNKTGLGMWALAMALVVQCYSKNPSNKDAALME
AARANNVQEVRRLLSEGADVNARHKLGWTALMVASISHNESVVQVLLAAGADPNLGDEFSSVYKTANEQG
VHSLEVLVTREDDFNNRLNHRASFKGCTALHYAVLADDYSIVKELLDRGANPLQRNEMGHTPLDYAREGE
VMKLLKTSETKYMEKQRKREAEERRRFPLEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLVFLFL
GSSGIGKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAV
VLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNR
IAENLGDVQMSDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKELNFWAKR
AKQRHNITLLWDREVADVLVDGYNVHYGARSIKHEVERRVVNQLAAAYEQDLLPGGCTLRITVEDSDKHL
LKSPELPSPQAEKRPPTLRLEIIDKDSKTRKLDIQAPLHPEKVCYTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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