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Report for CCDS25817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25817.1 Public Mus musculus 12 Cyria 23 108 98 CCDS HistoryNCBI Gene:76820Re-query CCDS DB by CCDS ID:25817.1Re-query CCDS DB by GeneID:76820See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25817.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069066.13 ENSMUSP00000065613.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069066.13Link to Ensembl Protein Viewer:ENSMUSP00000065613.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069066Re-query CCDS DB by Protein ID:ENSMUSP00000065613
Original member Current member EBI ENSMUST00000069005.9 ENSMUSP00000068125.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069005.9Link to Ensembl Protein Viewer:ENSMUSP00000068125.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000069005Re-query CCDS DB by Protein ID:ENSMUSP00000068125
Original member Current member EBI ENSMUST00000223061.1 ENSMUSP00000152252.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223061.1Link to Ensembl Protein Viewer:ENSMUSP00000152252.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223061Re-query CCDS DB by Protein ID:ENSMUSP00000152252
Original member Current member NCBI NM_001146119.2 NP_001139591.1 Accepted alive Link to Nucleotide Sequence:NM_001146119.2Link to Protein Sequence:NP_001139591.1Re-query CCDS DB by Nucleotide ID:NM_001146119Re-query CCDS DB by Protein ID:NP_001139591Link to BLAST:NP_001139591.1
Original member Current member NCBI NM_001364432.1 NP_001351361.1 Accepted alive Link to Nucleotide Sequence:NM_001364432.1Link to Protein Sequence:NP_001351361.1Re-query CCDS DB by Nucleotide ID:NM_001364432Re-query CCDS DB by Protein ID:NP_001351361Link to BLAST:NP_001351361.1
Original member Current member NCBI NM_029758.5 NP_084034.2 Accepted alive Link to Nucleotide Sequence:NM_029758.5Link to Protein Sequence:NP_084034.2Re-query CCDS DB by Nucleotide ID:NM_029758Re-query CCDS DB by Protein ID:NP_084034Link to BLAST:NP_084034.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139591.1 323 Q8BHZ0 323 100% 0 0
NP_001351361.1 323 Q8BHZ0 323 100% 0 0
NP_084034.2 323 Q8BHZ0 323 100% 0 0

Chromosomal Locations for CCDS 25817.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 12340689 12340758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12358045 12358166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12359213 12359318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12361435 12361571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12362015 12362092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12362252 12362368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12362461 12362540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12364720 12364846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12369894 12369964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 12372747 12372810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGGAAACTTGCTCAAAGTCCTGACCCGGGAAATTGAGAATTATCCACACTTCTTCCTGGATTTTGAAA
ATGCACAGCCTACAGAAGGAGAGCGAGAGATATGGAACCAGATCAGTGCTGTCCTCCAGGATTCTGAGAG
CATCCTCACAGACTTACAGGCTTACAAAGGGGCAGGACCAGAGATCCGAGATGCAATTCAAAATCCCAAT
GACATTCAACTTCAGGAGAAGGCTTGGAATGCAGTGTGTCCTCTGGTGGTGAGGCTGAAGAGGTTTTACG
AATTCTCCATCCGTCTTGAAAAAGCACTTCAGAGTTTATTGGAATCTCTGACGTGTCCACCCTATACACC
AACCCAGCACCTGGAACGGGAGCAAGCCCTCGCAAAGGAATTTGCAGAAATCTTACATTTTACCCTTCGA
TTCGATGAGCTGAAGATGAGGAACCCCGCTATTCAGAATGACTTCAGTTACTATCGAAGAACAATAAGTC
GTAACCGTATCAACAACATGCATCTAGACATTGAGAATGAAGTTAATAATGAGATGGCCAATCGAATGTC
CCTCTTCTATGCAGAAGCCACACCGATGTTGAAGACTCTTAGCAATGCCACAATGCACTTTGTCTCCGAA
AATAAAACCCTGCCAATAGAGAATACCACGGACTGCCTCAGTACGATGACAAGCGTCTGTAAAGTCATGC
TGGAGACACCGGAGTACAGGAGCAGGTTTACAAGCGAGGAGACACTGATGTTTTGCATGAGGGTGATGGT
GGGCGTCATCATCCTCTATGACCACGTGCACCCCGTGGGAGCTTTCTGCAAAACATCCAAGATTGATATG
AAAGGCTGCATAAAGGTGTTGAAGGAACAGGCCCCAGACAGTGTGGAAGGGCTCCTGAATGCTCTCAGGT
TCACCACAAAGCACTTGAATGATGAATCGACTTCCAAACAGATTCGAGCGATGCTTCAGTAG

Translation (323 aa):
MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILTDLQAYKGAGPEIRDAIQNPN
DIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLR
FDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNNEMANRMSLFYAEATPMLKTLSNATMHFVSE
NKTLPIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDM
KGCIKVLKEQAPDSVEGLLNALRFTTKHLNDESTSKQIRAMLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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