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Report for CCDS75329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75329.1 Public Homo sapiens 5 PCDHGA3 24 110 108 CCDS HistoryNCBI Gene:56112Re-query CCDS DB by CCDS ID:75329.1Re-query CCDS DB by GeneID:56112See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75329.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619750.1 ENSP00000479265.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619750.1Link to Ensembl Protein Viewer:ENSP00000479265.1Re-query CCDS DB by Nucleotide ID:ENST00000619750Re-query CCDS DB by Protein ID:ENSP00000479265
Original member Current member NCBI NM_032011.2 NP_114400.1 Accepted alive Link to Nucleotide Sequence:NM_032011.2Link to Protein Sequence:NP_114400.1Re-query CCDS DB by Nucleotide ID:NM_032011Re-query CCDS DB by Protein ID:NP_114400Link to BLAST:NP_114400.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114400.1 829 Q9Y5H0-2 829 100% 0 0

Chromosomal Locations for CCDS 75329.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141344034 141346523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2490 nt):
ATGACCAATTGCCTGAGTTTCCGAAATGGCAGAGGACTGGCCCTGCTGTGCGCGCTCCTGGGGACGCTGT
GCGAAACAGGATCCGGTCAGATCCGCTACTCGGTGTCTGAGGAGCTAGATAAAGGTTCCTTCGTGGGCAA
CATCGCTAACGACCTGGGGCTAGAGCCCCGGGAGCTGGCGGAGCGCGGAGTCCGCATCGTCTCCAGAGGT
AGGACGCAGCTTTTCTCTCTGAATCCGCAAAGCGGCAGCTTGGTCACCGCGGAGAGGATAGACCGGGAGG
AGCTCTGCGCTCAGATCCCGCTGTGTCTGGTAAAAATTAACATTCTGGTTGAGGATAAATTGAAAATTTT
TGAAGTAGAAATAGAAATTAAAGATATTAATGATAATGCTCCTAATTTCCCAACAGAGGAATTGGAAATA
AAAATTGGTGAACTAACGGTTCCTGGAACCCGATTTCCAATTAAAACTGCTTTTGACCCAGATGTAGGCA
TTAACTCCCTGCAGAACTACAAGCTTAGCCCCAATGACTACTTCTCTCTGGCTGTGAATAGCGTCTCTGA
GGGGGCCAAGTATCCAGAGCTGGTGCTGGAGCGGGCCCTGGACCGTGAGAAAAAAGAAATTCACCAGCTT
GTCCTGGTTGCCTCTGATGGTGGCGACCCTGTCCACTCTGGCAACTTGCACATCCAAGTGATAGTCCTGG
ATGCAAATGACAACCCACCAATGTTTACTCAGCCTGAGTACCGTGTGAGTGTTTGGGAGAACGTGCCTGT
GGGTACCCGGCTGCTCACGGTGAATGCCACTGACCCTGACGAGGGATTCAATGCTCAAGTGTCTTATATT
CTAGATAAAATGCCTGGGAAAATCGCTGAGATTTTCCATCTTAACTCAGTGAGTGGAGAAGTATCAATAT
TAAAAAGTCTAGATTATGAGGATGCCATGTTCTATGAAATTAAAATTGAAGCACAGGATGGACCAGGTCT
TCTTTCAAGAGCCAAGATTCTAGTCACGGTTCTGGATGTGAATGACAATGCTCCAGAAATTACAATCACG
TCTCTCACAAGCTCAGTCCCAGAAGAGGGCACCGTTGGAAGAGAAATTGCTCTTATCGACGTGCATGACC
GAGATTCTGGGCAGAATGGGCAGGTTGAAGTTTTTGTCCTGGGAAATCTGCCATTTAAGTTAGAAAAATC
AATAGATCAATATTACCGCTTAGTGACGGCCACATCCCTGGACCGCGAACAAATATCAGAATATAACATT
AGTCTGAGAGCCTCAGATGGGGGAAGCCCGCCACTGTCCACAGAAACTCACATCACCCTGCATGTGATTG
ACATCAATGACAACCCACCCACCTTCCCTCATTTATCCTACTCCGCCTACATTCCAGAAAACAACCCCAG
AGGAGCCTCCATCTTCTCAGTGACAGCCCAGGACCCAGATAGCAACAACAACGCCCGCATCACTTATGCA
TTGACCGAGGACACTCTCCAGGGGGCGCCCCTGTCCTCCTTCGTCTCTATCAACTCCAACACTGGCGTCC
TATACGCGCTGAGATCCTTCGACTACGAGCAATTTAGAGACTTAAAGCTACTGGTGACAGCCAGCGACAG
CGGGAACCCTCCACTCAGCAGCAACGTGTCGCTGAACCTGTTCGTGCTGGACCAGAACGACAACGCGCCC
GAGATCCTGTACCCCGCCCTCCCCACAGACGGTTCCACTGGCGTGGAGCTGGCGCCTCGCTCCGCAGAGC
CCGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACAGAGACTCGGGCCAGAACGCCTGGCTGTCCTACCG
CCTGCTCAAGGCCAGCGAGCCGGGACTCTTCTCGGTGGGTCTGCACACGGGCGAGGTGCGCACGGCGCGA
GCCCTGCTGGACAGAGACGCGCTCAAGCAGAGCCTCGTGGTGGCCGTCCAGGACCACGGCCAGCCCCCTC
TCTCCGCCACTGTCACGCTCACCGTGGCCGTGGCCGACAGGATCCCCGACATCCTGGCCGACCTGGGCAG
CCTCGAGCCCTCCGCCAAACCCAACGATTCGGACCTCACTCTGTACCTGGTGGTGGCGGTGGCCGCGGTC
TCCTGCGTCTTCCTGGCCTTCGTCATCGTGCTGCTGGCGCTCAGGCTGCGGCGCTGGCACAAGTCACGCC
TGCTGCAGGCTTCGGGAGGCGGCTTGGCGAGTACGCCCGGCTCGCACTTTGTGGGCGCGGACGGGGTTCG
GGCTTTCCTGCAGACCTATTCCCACGAGGTCTCCCTCACTGCGGACTCGCGGAAGAGCCACCTGATTTTC
CCCCAGCCCAACTATGCGGACACGCTCATCAGCCAGGAGAGCTGTGAGAAAAGCGAGCCTCTTCTGATAA
CTCAGGATTTACTTGAAATGAAAGGAGATTCCAACCTACTTCAGGTGAGTTTATTTATTTCTTTGATTAT
TAAGAACAAATATGAGAATGTGGTTATTATAAAGCTTTAA

Translation (829 aa):
MTNCLSFRNGRGLALLCALLGTLCETGSGQIRYSVSEELDKGSFVGNIANDLGLEPRELAERGVRIVSRG
RTQLFSLNPQSGSLVTAERIDREELCAQIPLCLVKINILVEDKLKIFEVEIEIKDINDNAPNFPTEELEI
KIGELTVPGTRFPIKTAFDPDVGINSLQNYKLSPNDYFSLAVNSVSEGAKYPELVLERALDREKKEIHQL
VLVASDGGDPVHSGNLHIQVIVLDANDNPPMFTQPEYRVSVWENVPVGTRLLTVNATDPDEGFNAQVSYI
LDKMPGKIAEIFHLNSVSGEVSILKSLDYEDAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITIT
SLTSSVPEEGTVGREIALIDVHDRDSGQNGQVEVFVLGNLPFKLEKSIDQYYRLVTATSLDREQISEYNI
SLRASDGGSPPLSTETHITLHVIDINDNPPTFPHLSYSAYIPENNPRGASIFSVTAQDPDSNNNARITYA
LTEDTLQGAPLSSFVSINSNTGVLYALRSFDYEQFRDLKLLVTASDSGNPPLSSNVSLNLFVLDQNDNAP
EILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTAR
ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRIPDILADLGSLEPSAKPNDSDLTLYLVVAVAAV
SCVFLAFVIVLLALRLRRWHKSRLLQASGGGLASTPGSHFVGADGVRAFLQTYSHEVSLTADSRKSHLIF
PQPNYADTLISQESCEKSEPLLITQDLLEMKGDSNLLQVSLFISLIIKNKYENVVIIKL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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