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Report for CCDS71974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71974.1 Public Mus musculus 7 4933405O20Rik 23 108 98 CCDS HistoryNCBI Gene:243996Re-query CCDS DB by CCDS ID:71974.1Re-query CCDS DB by GeneID:243996See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 71974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119710.2 ENSMUSP00000138215.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119710.2Link to Ensembl Protein Viewer:ENSMUSP00000138215.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119710Re-query CCDS DB by Protein ID:ENSMUSP00000138215
Original member Current member NCBI NM_172901.2 NP_766489.1 Accepted alive Link to Nucleotide Sequence:NM_172901.2Link to Protein Sequence:NP_766489.1Re-query CCDS DB by Nucleotide ID:NM_172901Re-query CCDS DB by Protein ID:NP_766489Link to BLAST:NP_766489.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766489.1 396 Q8BPC6 396 100% 0 0

Chromosomal Locations for CCDS 71974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 50599220 50600410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGTTGGCAGTAACCAGCTGTTCTATGAAAACAGTTCTCCAATATGCTGTGTTTCTTGGCCATTCTAGGG
AGGTAGTGTGTGAGCTTGTGACCTCCTTCAGAAGTTTCTGCTCACATTGCGCAGTGCCTCCTTCACCAAA
GTATGGAGGAAGACACACGGTGGCTATGATTCCTGGAGATGGCATTGGGCCTGAGCTTATGGTTCATGTC
AAGAAAATATTCAGATCAAATTGTGTGCCAGTGGACTTTGAAGAGGTGTGGGTCACCTCGACATCTAATG
AAGAGGAGATCAACAATGCTCTCATGGCCATCCGTCGGAACCGTGTCGCTCTGAAGGGCAATATTGCAAC
CAACCACAATCTGCCTGCCCGTTACAAGTCTCACAACACCAAGTTTCGCACCATCCTTGACCTCTATGCC
AGTGTCGTCCATTTCAAGACTTTTCCTGGTGTTATGACCCGACACAAAGACATAGACATCTTGGTTGTTC
GGGAGAATACAGAGGGGGAGTACACTAACCTAGAGCATGAGAGCGTGAAAGGCGTGGTAGAAAGCCTTAA
GATTGTGACAAAGACCAAGTCTGTGCGCATTGCTGATTATGCCTTCAAGTTGGCCCAAAAGATGGGGCGG
AAAAAGGTGACAGTTGTTCACAAAGCCAACATCATGAAACTGGGAGATGGGCTCTTCCTTCAGTGCTGTA
AGGATGTGGCAGCTCACTATCCTCAGATCACCTTAGAGAGTATGATTATAGACAACACCACAATGCAGTT
GGTATCGAAGCCCCAACAGTTTGATGTCATGGTGATGCCCAATCTTTATGGCAACATTATCAACAGTATC
TGCACAGGACTGGTTGGAGGGTCAGGAATTGTCCCTGGAGCCAATTATGGTGATTCATATGCAATATTTG
AGATGGGTTCAAAGGAAATAGGTAAAGATTTGGCTCACAGAAATATTGCCAATCCTGTCGCCATGCTGCT
GACCAGCTGTATCATGCTGGACTACCTTGATCTCCAACCCTATGCCACTCACATCCGCTCTGCAGTCATG
GCGTCCTTACAAAACAAAGCTGTCTGCACTCCAGACATTGGAGGTCAAGGGAACACTGCAAGCACTGTAG
AGTATATCTTACACCACATGAAAGAACAAACTAGTGGTTGTCATCCAAATTTCTTCCTGCAGTTCACTTG
A

Translation (396 aa):
MLAVTSCSMKTVLQYAVFLGHSREVVCELVTSFRSFCSHCAVPPSPKYGGRHTVAMIPGDGIGPELMVHV
KKIFRSNCVPVDFEEVWVTSTSNEEEINNALMAIRRNRVALKGNIATNHNLPARYKSHNTKFRTILDLYA
SVVHFKTFPGVMTRHKDIDILVVRENTEGEYTNLEHESVKGVVESLKIVTKTKSVRIADYAFKLAQKMGR
KKVTVVHKANIMKLGDGLFLQCCKDVAAHYPQITLESMIIDNTTMQLVSKPQQFDVMVMPNLYGNIINSI
CTGLVGGSGIVPGANYGDSYAIFEMGSKEIGKDLAHRNIANPVAMLLTSCIMLDYLDLQPYATHIRSAVM
ASLQNKAVCTPDIGGQGNTASTVEYILHHMKEQTSGCHPNFFLQFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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