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Report for CCDS28641.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
28641.1 |
Public |
Mus musculus |
17 |
Brd2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:14312](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:28641.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 17 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 28641.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000025193.13 |
ENSMUSP00000025193.6 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000025193.13](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000025193.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000025193](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000025193](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000114242.8 |
ENSMUSP00000109880.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000114242.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000109880.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000114242](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000109880](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001204973.1 |
NP_001191902.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001204973.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001191902.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001204973](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001191902](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001191902.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_010238.3 |
NP_034368.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_010238.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_034368.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_010238](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_034368](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_034368.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 28641.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2397 nt): ATGCTGCAAAACGTGACTCCCCACAAGCTCCCTGGGGAAGGGAATGCAGGGTTACTGGGGCTGGGCCCAG AGGCAGCAGCACCAGGGAAAAGGATTCGAAAGCCTTCTCTGCTGTATGAGGGATTTGAGAGCCCCACAAT GGCTTCTGTACCAGCTTTACAACTGGCCCCTGCCAATCCACCACCCCCTGAGGTGTCCAATCCCAAAAAG CCAGGACGGGTAACAAACCAACTGCAGTACCTGCACAAGGTAGTGATGAAGGCTCTGTGGAAGCATCAGT TTGCATGGCCATTCCGGCAGCCTGTGGACGCTGTGAAGCTGGGTTTGCCGGATTATCACAAAATTATAAA ACAGCCTATGGACATGGGTACTATCAAGAGGAGACTTGAAAACAATTACTACTGGGCTGCCTCAGAATGT ATGCAGGATTTTAATACTATGTTTACCAACTGTTACATTTATAACAAGCCCACCGATGATATTGTCCTAA TGGCACAGACACTGGAAAAGATCTTCCTACAGAAAGTAGCATCCATGCCACAAGAGGAGCAAGAGCTTGT GGTGACCATCCCTAAAAACAGCCATAAGAAGGGGGCCAAGTTAGCAGCACTCCAGGGCAGTATTACCAGT GCCCATCAGGTGCCTGCTGTCTCTTCTGTGTCGCATACAGCCCTGTATACACCACCACCTGAAATACCTA CCACTGTCCTCAACATTCCCCACCCATCAGTCATCTCTTCTCCTCTTCTTAAGTCCCTGCATTCTGCTGG ACCCCCACTCCTTGCTGTATCAGCAGCGCCTCCAGCTCAGCCCCTTGCCAAGAAAAAAGGCGTTAAACGG AAAGCGGATACTACCACCCCTACACCCACAGCCATCCTGGCTCCTGGTTCCCCAGCTAGTCCTCCTGGGA GTCTTGAGCCAAAGGCAGCAAGGCTCCCTCCTATGCGCAGAGAGAGTGGCCGCCCAATCAAACCCCCACG AAAAGACTTGCCTGACTCGCAACAGCAACACCAGAGCTCTAAGAAAGGGAAGCTGTCAGAGCAGTTAAAG CACTGCAACGGCATCCTGAAGGAACTGCTCTCAAAGAAGCACGCTGCCTACGCCTGGCCCTTCTATAAGC CAGTGGACGCTTCTGCTCTTGGCCTTCATGATTACCATGACATCATTAAACACCCCATGGACCTCAGCAC TGTCAAGCGGAAGATGGAGAACCGTGACTACCGGGATGCACAGGAGTTTGCTGCTGATGTACGGCTTATG TTCTCCAACTGCTATAAGTACAATCCTCCAGACCACGATGTTGTGGCTATGGCACGAAAGTTGCAGGATG TGTTTGAGTTTCGCTATGCCAAGATGCCAGATGAGCCACTGGAACCAGGACCTCTACCAGTCTCTACTGC CTTGCCTCCTGGGTTGACCAAATCCTCTTCAGAGTCCTCCAGTGAGGAAAGTAGCAGTGAGAGTTCCTCT GAGGAAGAGGAGGAGGAGGAAGAAGATGAGGACGAGGAGGAGAGTGAAAGCTCAGACTCTGAGGAGGAAA GGGCTCATCGCCTAGCAGAGCTGCAGGAGCAGCTTCGGGCAGTTCATGAACAACTGGCTGCCCTGTCCCA GGGCCCAATATCTAAGCCCAAGCGGAAGAGAGAGAAAAAGGAAAAAAAGAAGAAACGGAAGGCAGAGAAA CATCGTGGCCGAATTGGGATCGATGAAGATGATAAGGGGCCTAGGGCACCTCGCCCACCTCAGCCCAAGA AATCTAAGAAAGCAGGTGGTGGGGGTAGCAATGCTACTACACTCAGCCATCCTGGCTTTGGGACTTCCGG AGGAAGTAGCAACAAGCTACCTAAAAAGTCTCAAAAGACAGCTCCACCTGTCCTTCCCACTGGCTATGAT TCTGAGGAGGAGGAAGAAAGCAGGCCCATGAGTTATGATGAGAAGAGACAGTTAAGCCTGGATATCAATA AGTTACCTGGGGAAAAGCTGGGTCGAGTAGTACATATCATCCAAGCCAGGGAACCCTCTCTACGTGATTC AAATCCAGAAGAAATTGAGATTGATTTTGAAACACTCAAGCCGTCCACACTTAGAGAGCTTGAGCGATAT GTTTTATCCTGCCTTCGAAAGAAACCCCGGAAGCCCTACACTATTAGGAAACCTGTGGGAAAAACAAAGG AGGAACTGGCTTTGGAGAAGAAGCGGGAGCTAGAGAAGCGGTTGCAGGATGTCAGTGGACAGCTCAACTC CACCAAAAAGCCTCCCAAGAAAGCGAGTGAGAAGACAGAGTCATCTGCACAGCAAGTGGCAGTGTCCCGT CTCAGTGCTTCTAGTTCCAGCTCAGATTCCAGCTCCTCGTCGTCATCTTCCTCTTCTTCAGACACCAGCG ATTCAGACTCGGGCTAA
Translation (798 aa): MLQNVTPHKLPGEGNAGLLGLGPEAAAPGKRIRKPSLLYEGFESPTMASVPALQLAPANPPPPEVSNPKK PGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASEC MQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQELVVTIPKNSHKKGAKLAALQGSITS AHQVPAVSSVSHTALYTPPPEIPTTVLNIPHPSVISSPLLKSLHSAGPPLLAVSAAPPAQPLAKKKGVKR KADTTTPTPTAILAPGSPASPPGSLEPKAARLPPMRRESGRPIKPPRKDLPDSQQQHQSSKKGKLSEQLK HCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLM FSNCYKYNPPDHDVVAMARKLQDVFEFRYAKMPDEPLEPGPLPVSTALPPGLTKSSSESSSEESSSESSS EEEEEEEEDEDEEESESSDSEEERAHRLAELQEQLRAVHEQLAALSQGPISKPKRKREKKEKKKKRKAEK HRGRIGIDEDDKGPRAPRPPQPKKSKKAGGGGSNATTLSHPGFGTSGGSSNKLPKKSQKTAPPVLPTGYD SEEEEESRPMSYDEKRQLSLDINKLPGEKLGRVVHIIQAREPSLRDSNPEEIEIDFETLKPSTLRELERY VLSCLRKKPRKPYTIRKPVGKTKEELALEKKRELEKRLQDVSGQLNSTKKPPKKASEKTESSAQQVAVSR LSASSSSSDSSSSSSSSSSSDTSDSDSG
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