NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14377.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14377.2 Public Homo sapiens X AMER1 24 110 108 CCDS HistoryNCBI Gene:139285Re-query CCDS DB by CCDS ID:14377.2Re-query CCDS DB by GeneID:139285See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14377.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374869.8 ENSP00000364003.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374869.8Link to Ensembl Protein Viewer:ENSP00000364003.4Re-query CCDS DB by Nucleotide ID:ENST00000374869Re-query CCDS DB by Protein ID:ENSP00000364003
Original member Current member NCBI NM_152424.4 NP_689637.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152424.4Link to Protein Sequence:NP_689637.3Re-query CCDS DB by Nucleotide ID:NM_152424Re-query CCDS DB by Protein ID:NP_689637Link to BLAST:NP_689637.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689637.3 1135 Q5JTC6-1 1135 100% 0 0

Chromosomal Locations for CCDS 14377.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 64189879 64193286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3408 nt):
ATGGAGACCCAAAAGGATGAAGCTGCTCAGGCCAAGGGAGCTGCAGCCTCTGGGAGTACCCGTGAACAAA
CAGCAGAAAAAGGAGCCAAGAACAAGGCAGCTGAGGCGACAGAAGGACCAACCTCAGAGCCATCCTCATC
CGGCCCAGGTAGGCTGAAGAAAACTGCCATGAAACTCTTTGGTGGCAAGAAGGGTATCTGTACTCTGCCT
AGTTTCTTTGGAGGGGGACGGAGCAAAGGTTCTGGGAAAGGCAGCTCCAAGAAAGGTCTCAGCAAGAGCA
AGACCCACGATGGCCTGAGTGAAGCAGCCCATGGCCCTGAAGATGTTGTCAGTGAAGGAACTGGCTTCTC
CCTGCCTTTGCCTGAGTTACCCTGCCAATTTCCCAGCTCTCAGAGTGCCCATGGGGCTTTGGAGACAGGC
TCCAGATGTAAGACATCTGTGGCTGGAGCCACAGAGAAAGCTGTGGCTGAGAAGTTTCCCTCTATGCCCA
AGCCAAAGAAAGGCCTAAAAGGCTTTTTTAGCAGTATCCGCCGTCACCGGAAGAGCAAGGTCACTGGGGC
TGAGCAAAGTGAGCCAGGGGCCAAGGGGCCTGAGAGGGTCAGAGCCAGGCCTCATGAGCACGTGAGCTCA
GCCCCTCAGGTGCCCTGCTTTGAGGAGACCTTCCAAGCCCCTAGAAAGGAAAATGCTAACCCCCAAGATG
CCCCTGGGCCAAAAGTTTCTCCAACACCAGAACCTTCTCCACCAGCTACTGAGAAAATGGCCTGTAAAGA
TCCAGAAAAACCCATGGAGGCCTGTGCCTCAGCACATGTGCAACCCAAGCCTGCCCCTGAAGCCAGTAGC
CTAGAGGAGCCCCATAGCCCAGAAACAGGGGAGAAGGTAGTAGCAGGAGAGGTAAACCCACCCAATGGCC
CTGTGGGGGACCCACTGAGCCTCTTGTTTGGGGATGTGACATCCCTGAAAAGCTTTGATTCATTGACAGG
TTGTGGTGACATAATAGCAGAACAGGACATGGACAGTATGACAGACAGCATGGCCTCTGGGGGCCAGAGA
GCAAACCGAGATGGGACCAAGCGAAGTTCCTGCCTGGTGACCTACCAAGGAGGTGGGGAGGAGATGGCCT
TGCCAGATGATGATGACGAGGAGGAAGAAGAGGAAGAAGAGGTGGAATTAGAGGAGGAAGAAGAGGAGGT
TAAGGAGGAGGAAGAAGATGATGACTTAGAATATCTGTGGGAAACTGCCCAAATGTATCCACGGCCCAAT
ATGAACCTGGGCTACCATCCCACCACATCCCCAGGCCACCACGGCTACATGCTCCTTGACCCAGTTAGGT
CTTATCCTGGCCTAGCCCCTGGGGAACTTTTGACTCCTCAGAGTGACCAGCAAGAATCCGCCCCCAATAG
TGATGAAGGTTATTATGACTCCACCACACCTGGATTTGAGGATGATTCAGGTGAGGCCCTGGGGCTTGTC
CGCAGGGATTGTCTACCCCGAGACAGCTACAGTGGAGATGCCCTATATGAGTTCTATGAGCCAGATGACA
GCCTTGAGAACTCTCCACCTGGAGATGACTGCCTTTATGACCTCCATGGTCGAAGCTCTGAGATGTTTGA
CCCCTTCTTAAACTTTGAGCCCTTTTTGTCCTCCCGGCCACCTGGGGCAATGGAGACAGAGGAAGAACGG
CTAGTGACCATCCAGAAACAGTTGTTGTATTGGGAGCTTCGGCGGGAGCAGCTTGAGGCCCAGGAGGCAC
GTGCCCGAGAAGCTCATGCCAGGGAGGCCCACGCCAGGGAGGCCTATACTCGAGAGGCTTATGGCAGGGA
AGCCTATGCCAGGGAGGCCCACACTTGGGAAGCTCATGGCAGGGAGGCCAGAACCCGAGAAGCCCAGGCC
CGAGAGGTTCGTTGTAGAGAGACTCAAGTCCGAGAGACCCAGGCCCGGCAGGAGAAGCCCGTCTTAGAGT
ATCAGATGAGGCCCTTAGGCCCATCAGTGATGGGCCTGGCAGCAGGGGTATCAGGGACCTCTCAGATTTC
CCACCGGGGAATTACCTCAGCTTTCCCCACCACTGCAAGCAGCGAGCCAGACTGGAGGGACTTCCGTCCT
CTGGAGAAGCGTTATGAAGGAACCTGCTCCAAGAAAGATCAAAGTACCTGCCTGATGCAGCTCTTCCAGA
GTGATGCCATGTTTGAGCCAGACATGCAAGAAGCAAATTTTGGAGGATCTCCCAGGAGGGCCTACCCTAC
TTATTCACCCCCTGAAGATCCAGAGGAAGAGGAGGTTGAGAAGGAAGGGAATGCCACTGTGAGTTTCTCA
CAGGCCCTGGTAGAGTTCACCAGCAATGGGAACCTCTTTTCCAGCATGTCCTGCAGCTCTGACTCTGACT
CATCTTTCACTCAAAACCTCCCTGAGCTGCCTCCCATGGTGACCTTTGACATCGCTGATGTGGAACGGGA
TGGGGAAGGCAAGTGTGAAGAGAATCCTGAGTTCCACAATGATGAAGATCTTGCAGCCTCCTTGGAAGCC
TTTGAGCTGGGCTACTATCACAAACATGCCTTCAACAACTACCATAGTCGATTCTACCAAGGCCTGCCCT
GGGGTGTGAGCAGCCTCCCTCGATACTTGGGACTGCCTGGCCTGCACCCTCGACCTCCACCTGCTGCTAT
GGCCCTCAACAGGAGAAGCCGCTCTCTCGACACTGCAGAGACCCTGGAGATGGAGCTCTCCAATTCCCAC
TTGGTCCAGGGCTACCTCGAGTCTGATGAGCTGCAGGCCCAGCAGGAAGATTCAGATGAGGAGGACGAAG
AGGAGGAAGAAGGAGAATGGAGCCGAGACAGTCCCCTTTCCCTCTATACTGAACCCCCAGGGGCCTATGA
TTGGCCTGCTTGGGCTCCCTGTCCTCTTCCAGTGGGGCCAGGTCCTGCCTGGATAAGCCCCAACCAGTTG
GACAGGCCTTCCAGCCAGTCTCCATATAGGCAGGCAACCTGTTGCATACCTCCTATGACCATGTCAATAT
CACTATCAGTGCCAGAGTCAAGGGCACCTGGGGAATCTGGGCCTCAACTAGCTCGTCCCTCACACCTACA
CCTGCCCATGGGCCCTTGCTATAACCTCCAGCCACAGGCCTCCCAGAGCATGAGGGCCAGGCCTCGAGAT
GTGCTGCTGCCTGTTGATGAGCCCAGTTGCTCTTCCAGTTCTGGAGGCTTCAGCCCCAGCCCTCTACCAC
AGGCCAAGCCTGTGGGCATCACCCATGGCATTCCTCAGCTGCCCAGGGTCCGGCCTGAGCACCCCCAGCC
TCAGCCCACTCACTATGGGCCTTCCAGCCTTGACCTGTCAAAGGAGAGGGCTGAGCAAGGTGCCTCTCTT
GCCACCAGCTACTCCTCCACTGCCATGAATGGAAACCTAGCCAAGTAG

Translation (1135 aa):
METQKDEAAQAKGAAASGSTREQTAEKGAKNKAAEATEGPTSEPSSSGPGRLKKTAMKLFGGKKGICTLP
SFFGGGRSKGSGKGSSKKGLSKSKTHDGLSEAAHGPEDVVSEGTGFSLPLPELPCQFPSSQSAHGALETG
SRCKTSVAGATEKAVAEKFPSMPKPKKGLKGFFSSIRRHRKSKVTGAEQSEPGAKGPERVRARPHEHVSS
APQVPCFEETFQAPRKENANPQDAPGPKVSPTPEPSPPATEKMACKDPEKPMEACASAHVQPKPAPEASS
LEEPHSPETGEKVVAGEVNPPNGPVGDPLSLLFGDVTSLKSFDSLTGCGDIIAEQDMDSMTDSMASGGQR
ANRDGTKRSSCLVTYQGGGEEMALPDDDDEEEEEEEEVELEEEEEEVKEEEEDDDLEYLWETAQMYPRPN
MNLGYHPTTSPGHHGYMLLDPVRSYPGLAPGELLTPQSDQQESAPNSDEGYYDSTTPGFEDDSGEALGLV
RRDCLPRDSYSGDALYEFYEPDDSLENSPPGDDCLYDLHGRSSEMFDPFLNFEPFLSSRPPGAMETEEER
LVTIQKQLLYWELRREQLEAQEARAREAHAREAHAREAYTREAYGREAYAREAHTWEAHGREARTREAQA
REVRCRETQVRETQARQEKPVLEYQMRPLGPSVMGLAAGVSGTSQISHRGITSAFPTTASSEPDWRDFRP
LEKRYEGTCSKKDQSTCLMQLFQSDAMFEPDMQEANFGGSPRRAYPTYSPPEDPEEEEVEKEGNATVSFS
QALVEFTSNGNLFSSMSCSSDSDSSFTQNLPELPPMVTFDIADVERDGEGKCEENPEFHNDEDLAASLEA
FELGYYHKHAFNNYHSRFYQGLPWGVSSLPRYLGLPGLHPRPPPAAMALNRRSRSLDTAETLEMELSNSH
LVQGYLESDELQAQQEDSDEEDEEEEEGEWSRDSPLSLYTEPPGAYDWPAWAPCPLPVGPGPAWISPNQL
DRPSSQSPYRQATCCIPPMTMSISLSVPESRAPGESGPQLARPSHLHLPMGPCYNLQPQASQSMRARPRD
VLLPVDEPSCSSSSGGFSPSPLPQAKPVGITHGIPQLPRVRPEHPQPQPTHYGPSSLDLSKERAEQGASL
ATSYSSTAMNGNLAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH