NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31656.1 Public Homo sapiens 11 PIWIL4 24 110 108 CCDS HistoryNCBI Gene:143689Re-query CCDS DB by CCDS ID:31656.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31656.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299001.11 ENSP00000299001.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299001.11Link to Ensembl Protein Viewer:ENSP00000299001.6Re-query CCDS DB by Nucleotide ID:ENST00000299001Re-query CCDS DB by Protein ID:ENSP00000299001
Original member Current member NCBI NM_152431.3 NP_689644.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152431.3Link to Protein Sequence:NP_689644.2Re-query CCDS DB by Nucleotide ID:NM_152431Re-query CCDS DB by Protein ID:NP_689644Link to BLAST:NP_689644.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689644.2 852 Q7Z3Z4-1 852 100% 0 0

Chromosomal Locations for CCDS 31656.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94567519 94567605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94568730 94568808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94574999 94575130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94577278 94577492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94583448 94583569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94585445 94585525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94587050 94587247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94589121 94589232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94593518 94593641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94595309 94595426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94597804 94597915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94601795 94601979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94603984 94604056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94607439 94607639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94608583 94608686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94616493 94616563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94617954 94618107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94619760 94619885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94619997 94620144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94620876 94620992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2559 nt):
ATGAGTGGAAGAGCCCGAGTGAAGGCCAGAGGCATCGCCCGCAGCCCCAGTGCCACAGAAGTGGGGCGCA
TCCAAGCCTCGCCATTGCCTAGATCTGTTGATCTTAGTAACAATGAAGCATCCTCTAGCAATGGCTTCTT
GGGAACAAGCAGGATCTCAACCAACGATAAATATGGGATATCTTCTGGTGATGCTGGAAGTACCTTCATG
GAAAGAGGTGTGAAAAACAAACAGGACTTTATGGATTTGAGTATCTGTACCAGAGAAAAATTGGCACATG
TGAGAAATTGTAAAACAGGTTCCAGTGGAATACCTGTGAAACTGGTTACAAACCTCTTTAACTTAGATTT
TCCCCAAGACTGGCAGCTATACCAGTACCATGTGACATATATTCCAGATTTAGCATCTAGAAGGCTGAGA
ATTGCTTTACTTTATAGTCATAGTGAACTTTCCAACAAAGCAAAAGCATTCGACGGTGCCATCCTTTTTC
TGTCACAAAAGCTAGAAGAAAAGGTCACAGAGTTGTCAAGTGAAACTCAAAGAGGTGAGACTATAAAGAT
GACTATCACCCTGAAGAGGGAGCTGCCATCAAGTTCTCCCGTGTGCATCCAGGTCTTCAATATCATCTTC
AGAAAGATCCTCAAAAAGTTGTCCATGTACCAAATTGGACGGAACTTCTATAATCCTTCAGAGCCAATGG
AAATTCCCCAGCACAAATTATCCCTTTGGCCTGGGTTTGCCATTTCTGTGTCATATTTTGAAAGGAAGCT
CCTGTTTAGTGCTGATGTGAGTTACAAAGTCCTCCGGAATGAGACGGTTCTGGAATTCATGACTGCTCTC
TGTCAAAGAACTGGCTTGTCCTGTTTCACCCAGACGTGTGAGAAGCAGCTAATAGGGCTCATTGTCCTTA
CAAGATACAATAACAGAACCTACTCCATTGATGACATTGACTGGTCAGTGAAGCCCACACACACCTTTCA
GAAGCGGGATGGCACCGAGATCACCTATGTGGATTACTACAAGCAGCAGTATGATATTACTGTATCGGAC
CTGAATCAGCCCATGCTTGTTAGTCTGTTAAAGAAGAAGAGAAATGACAACAGTGAGGCTCAGCTCGCCC
ACCTGATACCTGAGCTCTGCTTTCTAACAGGGCTGACTGACCAGGCAACATCTGATTTCCAGCTGATGAA
GGCTGTGGCTGAAAAGACACGTCTCAGTCCTTCAGGCCGGCAGCAGCGCCTGGCCAGGCTTGTGGACAAC
ATCCAGAGGAATACCAATGCTCGCTTTGAACTAGAGACCTGGGGACTGCATTTTGGAAGCCAGATATCTC
TGACTGGCCGGATTGTGCCTTCAGAAAAAATATTAATGCAAGACCACATATGTCAACCTGTGTCTGCTGC
TGACTGGTCCAAGGATATTCGAACTTGCAAGATTTTAAATGCACAGTCTTTGAATACCTGGTTGATTTTA
TGTAGCGACAGAACTGAATATGTTGCCGAGAGCTTTCTGAACTGCTTGAGAAGAGTTGCAGGTTCCATGG
GATTTAATGTGGACTACCCCAAAATCATAAAAGTACAAGAAAATCCAGCTGCATTTGTTAGAGCTATACA
GCAATATGTTGATCCTGATGTTCAGCTGGTAATGTGCATTCTGCCTTCTAATCAGAAGACCTATTATGAT
TCCATTAAAAAATATTTGAGCTCAGACTGCCCAGTCCCAAGCCAATGTGTGCTTGCTCGGACCTTGAATA
AACAGGGCATGATGATGAGTATCGCCACCAAGATCGCTATGCAGATGACTTGCAAGCTCGGAGGCGAGCT
GTGGGCTGTGGAAATACCTTTAAAGTCCCTGATGGTGGTCGGTATTGATGTCTGTAAAGATGCACTCAGC
AAGGACGTGATGGTTGTTGGATGCGTGGCCAGTGTTAACCCCAGAATCACCAGGTGGTTTTCCCGCTGTA
TCCTTCAGAGAACAATGACTGATGTTGCAGATTGCTTGAAAGTTTTCATGACTGGAGCACTCAACAAATG
GTACAAGTACAATCATGATTTGCCAGCACGGATAATTGTGTACCGTGCTGGTGTAGGGGATGGTCAGCTG
AAAACACTTATTGAATATGAAGTCCCACAGCTGCTGAGCAGTGTGGCAGAATCCAGCTCAAATACCAGCT
CAAGACTGTCGGTGATTGTGGTCAGGAAGAAGTGCATGCCACGATTCTTTACCGAAATGAACCGCACTGT
ACAGAACCCCCCACTTGGCACTGTTGTGGATTCAGAAGCAACACGTAACGAATGGTATGACTTTTATCTG
ATCAGCCAGGTGGCCTGCCGGGGAACTGTTAGTCCTACCTACTATAATGTCATCTATGATGACAACGGCT
TGAAGCCCGACCATATGCAGAGACTTACATTCAAATTGTGCCACCTGTACTACAACTGGCCGGGCATAGT
CAGTGTCCCAGCACCATGTCAGTATGCTCACAAGCTGACCTTTCTGGTGGCACAAAGCATTCATAAAGAA
CCCAGTCTGGAATTAGCCAACCATCTCTTCTACCTGTGA

Translation (852 aa):
MSGRARVKARGIARSPSATEVGRIQASPLPRSVDLSNNEASSSNGFLGTSRISTNDKYGISSGDAGSTFM
ERGVKNKQDFMDLSICTREKLAHVRNCKTGSSGIPVKLVTNLFNLDFPQDWQLYQYHVTYIPDLASRRLR
IALLYSHSELSNKAKAFDGAILFLSQKLEEKVTELSSETQRGETIKMTITLKRELPSSSPVCIQVFNIIF
RKILKKLSMYQIGRNFYNPSEPMEIPQHKLSLWPGFAISVSYFERKLLFSADVSYKVLRNETVLEFMTAL
CQRTGLSCFTQTCEKQLIGLIVLTRYNNRTYSIDDIDWSVKPTHTFQKRDGTEITYVDYYKQQYDITVSD
LNQPMLVSLLKKKRNDNSEAQLAHLIPELCFLTGLTDQATSDFQLMKAVAEKTRLSPSGRQQRLARLVDN
IQRNTNARFELETWGLHFGSQISLTGRIVPSEKILMQDHICQPVSAADWSKDIRTCKILNAQSLNTWLIL
CSDRTEYVAESFLNCLRRVAGSMGFNVDYPKIIKVQENPAAFVRAIQQYVDPDVQLVMCILPSNQKTYYD
SIKKYLSSDCPVPSQCVLARTLNKQGMMMSIATKIAMQMTCKLGGELWAVEIPLKSLMVVGIDVCKDALS
KDVMVVGCVASVNPRITRWFSRCILQRTMTDVADCLKVFMTGALNKWYKYNHDLPARIIVYRAGVGDGQL
KTLIEYEVPQLLSSVAESSSNTSSRLSVIVVRKKCMPRFFTEMNRTVQNPPLGTVVDSEATRNEWYDFYL
ISQVACRGTVSPTYYNVIYDDNGLKPDHMQRLTFKLCHLYYNWPGIVSVPAPCQYAHKLTFLVAQSIHKE
PSLELANHLFYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH