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Report for CCDS8790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8790.1 Public Homo sapiens 12 BCDIN3D 24 110 108 CCDS HistoryNCBI Gene:144233Re-query CCDS DB by CCDS ID:8790.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8790.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333924.6 ENSP00000335201.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333924.6Link to Ensembl Protein Viewer:ENSP00000335201.4Re-query CCDS DB by Nucleotide ID:ENST00000333924Re-query CCDS DB by Protein ID:ENSP00000335201
Original member Current member NCBI NM_181708.3 NP_859059.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181708.3Link to Protein Sequence:NP_859059.1Re-query CCDS DB by Nucleotide ID:NM_181708Re-query CCDS DB by Protein ID:NP_859059Link to BLAST:NP_859059.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_859059.1 292 Q7Z5W3 292 100% 0 0

Chromosomal Locations for CCDS 8790.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 49838371 49839015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49842854 49843087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGCGGTGCCCACGGAACTGGATGGAGGGAGTGTTAAGGAGACCGCAGCGGAAGAGGAATCGCGAGTTC
TGGCACCTGGCGCCGCCCCGTTCGGAAATTTTCCTCATTATTCTCGCTTCCACCCTCCGGAGCAACGGCT
CCGCCTCCTGCCCCCGGAGCTGCTTCGACAGCTCTTTCCTGAGAGTCCCGAGAACGGGCCGATTCTGGGG
CTCGACGTGGGGTGTAACTCCGGGGATCTGAGTGTGGCTCTATACAAACACTTCCTCTCCCTACCTGACG
GGGAAACCTGCTCAGATGCCTCAAGAGAATTCCGTCTCCTCTGCTGCGACATAGATCCAGTCCTGGTGAA
GCGAGCCGAAAAAGAATGTCCTTTTCCTGATGCCTTGACTTTTATCACCCTGGACTTCATGAATCAAAGG
ACCCGGAAGGTTCTCTTGAGCTCTTTCTTAAGCCAATTTGGACGTTCAGTTTTTGACATTGGCTTCTGCA
TGTCAATAACCATGTGGATTCATCTGAATCATGGAGACCATGGCCTATGGGAGTTCCTGGCCCATCTTTC
CTCCCTCTGCCACTACCTCCTTGTGGAGCCCCAACCCTGGAAGTGTTACCGGGCAGCTGCAAGGCGTCTC
CGAAAGCTGGGACTCCATGATTTTGACCACTTCCACTCCCTTGCCATCCGAGGTGACATGCCCAATCAGA
TTGTGCAGATCTTGACCCAGGATCATGGCATGGAATTAATATGTTGCTTTGGCAACACCAGTTGGGACAG
AAGCCTTCTGCTCTTCAGGGCAAAACAAACCATAGAGACTCATCCAATCCCTGAATCACTGATAGAAAAA
GGGAAAGAAAAGAACAGATTAAGTTTCCAGAAGCAGTGA

Translation (292 aa):
MAVPTELDGGSVKETAAEEESRVLAPGAAPFGNFPHYSRFHPPEQRLRLLPPELLRQLFPESPENGPILG
LDVGCNSGDLSVALYKHFLSLPDGETCSDASREFRLLCCDIDPVLVKRAEKECPFPDALTFITLDFMNQR
TRKVLLSSFLSQFGRSVFDIGFCMSITMWIHLNHGDHGLWEFLAHLSSLCHYLLVEPQPWKCYRAAARRL
RKLGLHDFDHFHSLAIRGDMPNQIVQILTQDHGMELICCFGNTSWDRSLLLFRAKQTIETHPIPESLIEK
GKEKNRLSFQKQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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