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Report for CCDS9391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9391.1 Public Homo sapiens 13 LACC1 24 110 108 CCDS HistoryNCBI Gene:144811Re-query CCDS DB by CCDS ID:9391.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9391.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325686.7 ENSP00000317619.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325686.7Link to Ensembl Protein Viewer:ENSP00000317619.5Re-query CCDS DB by Nucleotide ID:ENST00000325686Re-query CCDS DB by Protein ID:ENSP00000317619
Original member Current member EBI ENST00000441843.5 ENSP00000391747.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441843.5Link to Ensembl Protein Viewer:ENSP00000391747.1Re-query CCDS DB by Nucleotide ID:ENST00000441843Re-query CCDS DB by Protein ID:ENSP00000391747
Original member Current member NCBI NM_001128303.2 NP_001121775.1 Accepted alive Link to Nucleotide Sequence:NM_001128303.2Link to Protein Sequence:NP_001121775.1Re-query CCDS DB by Nucleotide ID:NM_001128303Re-query CCDS DB by Protein ID:NP_001121775Link to BLAST:NP_001121775.1
Original member Current member NCBI NM_001350638.2 NP_001337567.1 Accepted alive Link to Nucleotide Sequence:NM_001350638.2Link to Protein Sequence:NP_001337567.1Re-query CCDS DB by Nucleotide ID:NM_001350638Re-query CCDS DB by Protein ID:NP_001337567Link to BLAST:NP_001337567.1
Original member Current member NCBI NM_001350639.2 NP_001337568.1 Accepted alive Link to Nucleotide Sequence:NM_001350639.2Link to Protein Sequence:NP_001337568.1Re-query CCDS DB by Nucleotide ID:NM_001350639Re-query CCDS DB by Protein ID:NP_001337568Link to BLAST:NP_001337568.1
Original member Current member NCBI NM_001350640.2 NP_001337569.1 Accepted alive Link to Nucleotide Sequence:NM_001350640.2Link to Protein Sequence:NP_001337569.1Re-query CCDS DB by Nucleotide ID:NM_001350640Re-query CCDS DB by Protein ID:NP_001337569Link to BLAST:NP_001337569.1
Original member Current member NCBI NM_001350641.2 NP_001337570.1 Accepted alive Link to Nucleotide Sequence:NM_001350641.2Link to Protein Sequence:NP_001337570.1Re-query CCDS DB by Nucleotide ID:NM_001350641Re-query CCDS DB by Protein ID:NP_001337570Link to BLAST:NP_001337570.1
Original member Current member NCBI NM_001350642.2 NP_001337571.1 Accepted alive Link to Nucleotide Sequence:NM_001350642.2Link to Protein Sequence:NP_001337571.1Re-query CCDS DB by Nucleotide ID:NM_001350642Re-query CCDS DB by Protein ID:NP_001337571Link to BLAST:NP_001337571.1
Original member Current member NCBI NM_153218.4 NP_694950.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153218.4Link to Protein Sequence:NP_694950.2Re-query CCDS DB by Nucleotide ID:NM_153218Re-query CCDS DB by Protein ID:NP_694950Link to BLAST:NP_694950.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121775.1 430 Q8IV20 430 100% 0 0
NP_001337567.1 430 Q8IV20 430 100% 0 0
NP_001337568.1 430 Q8IV20 430 100% 0 0
NP_001337569.1 430 Q8IV20 430 100% 0 0
NP_001337570.1 430 Q8IV20 430 100% 0 0
NP_001337571.1 430 Q8IV20 430 100% 0 0
NP_694950.2 430 Q8IV20 430 100% 0 0

Chromosomal Locations for CCDS 9391.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 43880986 43881547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43882185 43882363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43883771 43883936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43888757 43888982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 43890114 43890273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGCAGAAGCTGTTTTGATTGATCTTTTTGGTTTGAAATTGAACTCTCAAAAAAACTGCCATCAGACAT
TACTGAAGACTTTGAATGCTGTCCAATACCACCATGCTGCCAAGGCCAAGTTTCTCTGTATAATGTGTTG
CAGTAACATCAGCTATGAAAGGGATGGAGAACAAGATAATTGTGAAATAGAAACAAGCAATGGATTATCA
GCTCTCTTGGAAGAATTTGAGATTGTTAGCTGTCCCAGCATGGCTGCCACTTTGTATACCATTAAACAGA
AAATTGATGAAAAAAATCTGAGCAGCATTAAGGTAATTGTACCCAGGCACAGGAAGACATTAATGAAAGC
TTTTATTGATCAACTCTTCACTGATGTTTACAATTTTGAATTTGAAGATTTGCAAGTGACTTTTAGGGGA
GGGCTTTTTAAACAGTCCATTGAAATAAACGTAATCACAGCTCAAGAACTAAGAGGAATTCAGAATGAAA
TAGAAACATTTTTGAGAAGTCTGCCAGCACTGAGAGGAAAATTAACTATTATCACTTCTTCTTTGATCCC
AGATATTTTCATACATGGATTTACTACAAGAACAGGTGGGATATCTTATATACCAACTCTTAGCTCATTC
AATCTCTTCAGTAGTTCCAAACGGAGAGATCCCAAGGTAGTGGTTCAAGAAAATCTGCGTAGGTTGGCGA
ATGCTGCAGGATTTAATGTGGAGAAATTTTACCGAATAAAGACTCATCATTCCAATGACATCTGGATTAT
GGGAAGAAAGGAGCCTGACTCTTATGATGGAATAACCACAAATCAGAGAGGAGTCACAATAGCAGCTCTT
GGTGCAGACTGTATACCGATAGTTTTTGCAGATCCAGTCAAAAAAGCATGTGGGGTTGCTCACGCTGGTT
GGAAAGGTACTTTGTTGGGTGTTGCTATGGCTACAGTGAATGCTATGATAGCAGAATATGGCTGCAGTTT
GGAAGACATTGTTGTTGTACTTGGACCTTCAGTAGGACCTTGCTGTTTTACTCTTCCAAGGGAATCAGCA
GAGGCATTTCATAATCTTCATCCTGCATGTGTACAACTATTTGATTCACCAAATCCCTGTATCGACATCC
GTAAAGCCACAAGGATTCTTCTAGAACAGGGAGGAATTCTTCCACAGAATATTCAGGACCAGAACCAAGA
TCTCAACCTCTGTACATCTTGCCATCCTGACAAGTTTTTCTCCCATGTCCGAGATGGCCTTAATTTTGGT
ACACAGATTGGCTTCATATCAATTAAAGAATGA

Translation (430 aa):
MAEAVLIDLFGLKLNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSNISYERDGEQDNCEIETSNGLS
ALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFIDQLFTDVYNFEFEDLQVTFRG
GLFKQSIEINVITAQELRGIQNEIETFLRSLPALRGKLTIITSSLIPDIFIHGFTTRTGGISYIPTLSSF
NLFSSSKRRDPKVVVQENLRRLANAAGFNVEKFYRIKTHHSNDIWIMGRKEPDSYDGITTNQRGVTIAAL
GADCIPIVFADPVKKACGVAHAGWKGTLLGVAMATVNAMIAEYGCSLEDIVVVLGPSVGPCCFTLPRESA
EAFHNLHPACVQLFDSPNPCIDIRKATRILLEQGGILPQNIQDQNQDLNLCTSCHPDKFFSHVRDGLNFG
TQIGFISIKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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