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Report for CCDS50168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50168.1 Public Mus musculus 17 Mtcl1 23 108 98 CCDS HistoryNCBI Gene:68617Re-query CCDS DB by CCDS ID:50168.1Re-query CCDS DB by GeneID:68617See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50168.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097291.9 ENSMUSP00000094894.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097291.9Link to Ensembl Protein Viewer:ENSMUSP00000094894.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097291Re-query CCDS DB by Protein ID:ENSMUSP00000094894
Original member Current member NCBI NM_001114098.2 NP_001107570.1 Accepted alive Link to Nucleotide Sequence:NM_001114098.2Link to Protein Sequence:NP_001107570.1Re-query CCDS DB by Nucleotide ID:NM_001114098Re-query CCDS DB by Protein ID:NP_001107570Link to BLAST:NP_001107570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107570.1 1893 Q3UHU5-3 1893 100% 0 0

Chromosomal Locations for CCDS 50168.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 66340502 66340540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66342826 66344365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66346354 66346385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66348243 66348521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66354123 66354377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66358022 66358189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66366344 66366541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66368230 66368460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66377853 66378011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66379129 66380436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66385860 66385919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66436080 66436238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66438167 66438391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 66448317 66449345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5682 nt):
ATGGAGACGCTGAACGGCCCCGCGGGCGGCGGCGCCCCGGACACCAAGCCGCAGCCAGCCGGCCAGCATC
ACCGCCACCACCACCTGCACCCGCTGGCCGAGAGGAGGCGGCTGCACCGCGCACCCTCGCCCGCCAGACC
CTTCCTCAAGGACCTGCACACGCGGCCCGCCACGGCCACCCCCTCTGCGGGCCGTGCCCCGACTCCCGCG
GCTCCTCGCTCGCCTAGCCTTGCCGGGAAGGCGCCGCCGTCGCCCGGGCCCCCGGCCGCGCCCGGTCGCC
TCTCCCGACGCAGCGGTGTAGTCCCCGGCGCGAAGGACAAGCCGCCGCCGGGCGCCGGAGCCAGGTCGGC
GGGCGGCGCTAAGGCCGTCCCGGGGACCAGGAGGGCGGCGCGCGCGGGGCCGGCGGAGCCACTGTCCCGG
GTTGGGAGGCCGACTGGGGCCGAGCCACCGCCTGCCGTCGCGAAGGGTCGCAAAACCAAGCGCGGCCCCG
GGACGCCTCCAGCTCGCGCCGTCGTGCCCCCGGCTCGCGCCTCCCGGGTCCCCGCCGTGACCCTCTCTGT
GACCTCGGTGGCTGGCTGTCGTATCAACCACACGGACAGCAGCTCGGATCTCTCCGACTGCGCCTCCGAA
CCCTTGTCTGATGAGCAGCGCCTACTCCCCGCCGCCAGCAGCGACGCTGAGTCGGGCACCGGCTCCAGTG
ACCGGGAACCCATACGCGGAGCACCCACTCCGAGCTCCGGATCCCGCGGGCCGCCGCCGGGCAGCCCCGA
GCCCCCTATCCTGCTCGCGGCGCCCCCTGTCGCCAGTGCCTGTCTCGGGGGCCGAAGCAGCCCAGGCGGG
GCCTCCACAGGGTCCCCGGGACCCGGTTCTCAGGAGGATGTTGGGGGCCGAGCGCCACCGGAGCGGACGA
TTCTGGGGACCTCCAAGGAGCCTAGCCTGGGCGAACAGCCCCGGCTCTTGGTGGTGGCTGAGGAAGAGGA
GTTGCTGAGGGAGATGGAGGAACTGCGCTCGGAGAACGACTACCTCAAGGACGAGCTGGATGAGCTCCGT
GCAGAGATGGAGGAGATGAGGGATAGCTATCTGGAGGAGGACGGGTACCAGCTGCAGGAGCTCCGGAGAG
AGCTGGACCGTGCTAACAAGAACTGCAGAATCCTGCAGTACCGACTCAGGAAAGCCGAGCAGAAGAGCCT
GAAAGTGGCGGAAACAGGGCAGGTGGACGGGGAGCTCATCAGAAGCCTGGAGCAGGACTTGAAGGTAGCC
AAAGATGTGTCTGTCAGATTACACCACGAACTCGAGACCGTGGAGGAGAAGCGCGCTAAGGCTGAAGACG
ACAACGAAACGCTCCGGCAGCAGATGATCGAGGTGGAGGTATCCAGACAGGCCCTCCAGAATGAGGTGGA
GAGACTGAGGGAGAGTTCTCTGAAGAGAAGAGGCAGTCGGGAAATGTACAAAGAGAAGAAACTTGTTAAC
CAGGATGACAGTGCGGATTTGAAGTGTCAGCTTCAGTTTGTCAAAGAGGAAGCTTCCCTGATGCGCAAAA
AGATGGCCAAGTTGGGGCGGGAGAAGGACGAGTTGGAGCAGGAACTGCAGAAGTATAAGTCCCTCTATGG
TGATGTGGACAGTCCCCTCCCAACAGGGGAGGCTGGTGGTCCCCCCAGCACCAGGGAGGCAGAGCTGAAA
CTGCGGCTGAAGTTGGTGGAGGAGGAAGCCAGCATCTTGGGCAGGAAGATCGTGGAGCTGGAGGTGGAAA
ACCGTGGCCTCAAAGCAGAGATGGAAGACATACGGGTTCAGCATGAACGCGAGGGAACAGGCAGGGACCA
CGTGCCAAGCACTCCTACCTCACCCTTCGGAGACTCAATGGAGTCCTCCACGGAGCTCCGCCGGCACCTG
CAGTTTGTGGAAGAAGAGGCTGAGCTGCTGAGGAGATCCATCTCTGAGATTGAAGATCACAACCGGCAGT
TGACCCACGAGCTGAGCAAGTTCAAGTTTGAGCCTCACCAGGAGTCAGGGTGGCTTGGGGACGGTGTGTC
TAAGGGCCCCGCGGCCAGCGTTCCCCTGCAGGAGGAGCTGAAGTCAGCCAGGCTACAGATCGATGAGCTG
AGCGGGAAGGTACTGAAGCTGCAGTGTGAGAACCGGCTGCTTCTGTCCAATGCCCAACGGGGTGACCTCG
CCGCACATCTGGGGCTGCGCGCTCCTAGCCCCCGGGACAGTGATGCCGAGAGTGACGCGGGCAAGAAAGA
GAGCGATGGGGAGGAGGGCCGCCTTCCCCAGCCAAAGCGAGAAGGCCCTGTTGGTGGGGAGAGCGACTCG
GAGGACATGTTTGAGAAGACCTCGGGCTTCGGAAGCGGAAAGCCGTCGGAGGCTAGTGAGCCATGCCCGG
CAGAGCTGCTAAGGGTCCGGGAGGATACCGAGTGCCTGGTGACCATAAAGCTGGAGGCTCAGCGGCTTGA
GCGGACTGTGGAGCGCCTCATCTCTGATACAGATGGTTTCATCCACGACTCAGGACTGCGGGGCAATGGA
TTGGCCTCACCTGGAGTCCAAGGCGGAGGAGGTGAGGGCAACAGCCCGAGTGAGCCCCACTTGTTGGAGA
CCATCAATGTGAGGATGAAGGCTTTCAGGAAAGAGCTGCAGGCCTTCCTGGAGCAGATGTCCCGGATTGT
GGATGGTCTCTCGCCCTTATCCCACCTCACAGAGTCATCCAGCTTCCTCTCCACTGTGACTTCTGTGTCC
CGGGACTCCCCCATCGGGACCCTGGGAAAGGAGTTGGGCCCAGACTTGCAGTCCAAACTGAGAGAGCAGC
TGGAATGGCAGCTCAATCAGGATCGAGGGGACGAGCGAGAGGGCCTGCGTCTCCGAGCCACTCGGGAGCT
GCACCGGCGCGCGGATGGGGATTCCGGGAGCCACCATGGGCTGGGAGGCCAGAGCTGTTTCAACCTAGAG
ATGGAGGAGGACCACCTCTACGCCCTGCGGTGGAAGGAACTGGAGATGCACAGCCTGGCCCTGCAGAACA
CCCTTCACAAGCGGACGTGGAGCGACGAGAAGAATCTGCTGCAGCAGGAGCTCAGGTCCCTGAAGCAGAA
CATCTTCCTCTTCTACGTCAAGCTCAGGTGGCTGCTGAAACACTGGCGCCAAGGGAAGCAGATGGAGGAG
GGAGGAGAGGATCTGGAGGAGAGCGAACATCCAGAGAATGTGCCTGGGCTTGCTGAGCTTGGAGTCCAGG
GGGTTCACCAGACAGATGGGATAGACCAGGAGGATGCTGACCAAGGCTGTAGCCTTCCCATGGGAGAGCA
TGCCCCACACTCCCTGGTACAGATCAGCGAACACGGATCACGGCTACAGAGTTCAGACGGGGGACCACTT
AACAAACAGGTGGTGGAAAACCAGCAGCTCTTCAGGGCCCTCAAGGCTCTGCTGGAGGACTTCCGTTCGG
AGCTGCGCGAAGACGAGCATGCGCGGCTGCGGCTGCAGCAGCAGTACGCCAGCGACAAGGCTGCGTGGGA
TGTGGAGTGGGCTGTGCTCAAGTGCCGCCTGGAACAGCTGGAAGAGAAGACTGAGAAAAGCTTGGGCGAG
CTGGACTCCTCTGCTGAGGGCAAAGGGGCCTTGAAGAAGGAGAGAGAGGTGCACCAGAAACTGCTGGCTG
ACAGCCACAGCCTGGTGATGGACCTGCGCTGGCAGATCCATCACCGAGAGAAGAACTGGAACCGGGAGAA
GGTGGAGCTGCTGGAGCGTCTGGACAGCGAGCGGCAGGAGTGGGGGCGACAGAAGGAGGAGCTCCTGTGG
CGGGTGGAGCAGTTACAGAAAGAGAAAAGTCCCCGGAGAAGCGGCAGTTTCCTCTGCAGCCGAAGGGAAG
ACGACACACGCCCTTACCCGCACCAAGGAAGCCTTCACTCCTCCAGACCTGTGTCCATGTGGCCCTGTGA
AGACGCCGACTCCATCCCATTTGAAGACCGGCCGCTCTCCAAACTGAAGGAGTCGGACAGGTGCTCGGCC
AGTGAGAACCTGTACTTGGACGCTTTGTCCCTGGATGATGATCCAGGGGATCCGCCACCCCTCAGGAACT
GCCTTGCCGAGGAAGAAGAAAGTCGCAAGGGCAATCTTCAGAGGGCTGTGTCTGTGTCCTGTATGTCCGA
GTTCCAGCGTCTGATGGACGTCTCTCCGTTCCTGCCTGAGAAGGGGCTACCTTCCGCCGGCAGCAAGGAG
GATGTCACTCCACCCTTGTCTCCCGACGACTTGAAATACATTGAAGAATTCCATAGCAACGACTGGGATT
ACGCATCCCCCAGGGCTGAGGCCGATCGGCCTCCAGACCCCTGGGCAGACAGGACCGAGATGGGGAGGGT
GGGGCATGAAGCCACCACAGAGCCTTGTCCGGATCCCTCCTGGTATCTGACCACAAGTGTCACGATGACG
ACAGACACCATGACCAGTCCGGAGCACTGCCAGAAGCAGCCACTGCGGACCCATGTCCTCACTGAGCAGT
CTGGTGTGCACGTGCTGCACAGCCCGCCTGCCATTCGCCGGGTTGACAGTATAGCATCAGGCGGCGAGGG
CAGGAGCCGAGCGGACCCCGAGGGCCCCTTTCCTATGAGCAGAGCAAGAGGGAACCTGGCAGATGCCAAG
GGGGGTCATCCAGAACCTGTGCTCAACAGGTGGCCTTGCACGCCACCCAGACATCCCCGGGACTGTGTGG
AGGGGTCTCTTCGCCCCCTCGACAGACCTATCTGCCCCTCCCTGGGATTTGCCTCCCCTCTGAACAGCCT
AGATATGTCTAAGAACATGAGTGATGACATGAAGGAGGTGGCTTTTTCTGTCAGGAATGCCATCTGCGCC
GGTCCTGCCGAGCCACACGTCAGGGATATGGCCTGCCAGACCAATGGGTCCAGGACAGCAGGGACGCAGA
CCATCCAGACAATCAGCGTGGGCCTGCAGACCGAGGCCCTACGTGCCAGCGGCGTCACCAGCAGCCCCCA
CAAGTGTCTCACGCCAAAAGCCGGAGGTGGCACCACACCCGTGTCTTCTCCTTCCCGCAGCCTTAGGAGT
AGACAGGTGGCCCCTGCCATTGAGAAGGTGCAGGCCAAGTTTGAACGCACCTGCTGCTCCCCAAAGTACG
GTTCTCCCAAACTTCAGAGAAAGCCCCTCTCAAAAGCTGACCAGCCAAATAGCAGGACCTCACCAGGCAT
ACCCCAGAAAGGGTTCAGCGAGTCAGCCTGGGCCCGCTCCACCACCACGAGGGAGAGCCCTGTGCACACC
ACCATCAATGATGGCCTCTCCAGCCTCTTCAATATCATCGACCACAGTCCCATCGGGGTGCGGGCTGGGA
GCCGATCTCGGTCAGCAGAACCTCGACAGGAGCTGGGTCCAGGCCAGGAAACGGGCACCAGTTCCAGAGG
GAGGTCGCCCAGCCCGCTAGGGGTAGGCTCCGAGACGTTCAGGGAGGAGGGAGGAGAGAGCACGCCAGTG
AGACAGGACTTATCTGCGCCCCCTGGCTACACGCTCACTGAGAATGTGGCCCGGATCCTCAACAAAAAGT
TGTTGGAGCATGCCTTAAAGGAGGAGAGGAAGCAAGCCAGCCATGGCTCCTCAGGTCTCACCAGCGACAG
CCACACTGGAGAACCAGTGCCAGCCGAGCCAGGATCCATGGAGAACCAAACTGTCTTACTAACTGCCCCC
TGGGGACTCTAG

Translation (1893 aa):
METLNGPAGGGAPDTKPQPAGQHHRHHHLHPLAERRRLHRAPSPARPFLKDLHTRPATATPSAGRAPTPA
APRSPSLAGKAPPSPGPPAAPGRLSRRSGVVPGAKDKPPPGAGARSAGGAKAVPGTRRAARAGPAEPLSR
VGRPTGAEPPPAVAKGRKTKRGPGTPPARAVVPPARASRVPAVTLSVTSVAGCRINHTDSSSDLSDCASE
PLSDEQRLLPAASSDAESGTGSSDREPIRGAPTPSSGSRGPPPGSPEPPILLAAPPVASACLGGRSSPGG
ASTGSPGPGSQEDVGGRAPPERTILGTSKEPSLGEQPRLLVVAEEEELLREMEELRSENDYLKDELDELR
AEMEEMRDSYLEEDGYQLQELRRELDRANKNCRILQYRLRKAEQKSLKVAETGQVDGELIRSLEQDLKVA
KDVSVRLHHELETVEEKRAKAEDDNETLRQQMIEVEVSRQALQNEVERLRESSLKRRGSREMYKEKKLVN
QDDSADLKCQLQFVKEEASLMRKKMAKLGREKDELEQELQKYKSLYGDVDSPLPTGEAGGPPSTREAELK
LRLKLVEEEASILGRKIVELEVENRGLKAEMEDIRVQHEREGTGRDHVPSTPTSPFGDSMESSTELRRHL
QFVEEEAELLRRSISEIEDHNRQLTHELSKFKFEPHQESGWLGDGVSKGPAASVPLQEELKSARLQIDEL
SGKVLKLQCENRLLLSNAQRGDLAAHLGLRAPSPRDSDAESDAGKKESDGEEGRLPQPKREGPVGGESDS
EDMFEKTSGFGSGKPSEASEPCPAELLRVREDTECLVTIKLEAQRLERTVERLISDTDGFIHDSGLRGNG
LASPGVQGGGGEGNSPSEPHLLETINVRMKAFRKELQAFLEQMSRIVDGLSPLSHLTESSSFLSTVTSVS
RDSPIGTLGKELGPDLQSKLREQLEWQLNQDRGDEREGLRLRATRELHRRADGDSGSHHGLGGQSCFNLE
MEEDHLYALRWKELEMHSLALQNTLHKRTWSDEKNLLQQELRSLKQNIFLFYVKLRWLLKHWRQGKQMEE
GGEDLEESEHPENVPGLAELGVQGVHQTDGIDQEDADQGCSLPMGEHAPHSLVQISEHGSRLQSSDGGPL
NKQVVENQQLFRALKALLEDFRSELREDEHARLRLQQQYASDKAAWDVEWAVLKCRLEQLEEKTEKSLGE
LDSSAEGKGALKKEREVHQKLLADSHSLVMDLRWQIHHREKNWNREKVELLERLDSERQEWGRQKEELLW
RVEQLQKEKSPRRSGSFLCSRREDDTRPYPHQGSLHSSRPVSMWPCEDADSIPFEDRPLSKLKESDRCSA
SENLYLDALSLDDDPGDPPPLRNCLAEEEESRKGNLQRAVSVSCMSEFQRLMDVSPFLPEKGLPSAGSKE
DVTPPLSPDDLKYIEEFHSNDWDYASPRAEADRPPDPWADRTEMGRVGHEATTEPCPDPSWYLTTSVTMT
TDTMTSPEHCQKQPLRTHVLTEQSGVHVLHSPPAIRRVDSIASGGEGRSRADPEGPFPMSRARGNLADAK
GGHPEPVLNRWPCTPPRHPRDCVEGSLRPLDRPICPSLGFASPLNSLDMSKNMSDDMKEVAFSVRNAICA
GPAEPHVRDMACQTNGSRTAGTQTIQTISVGLQTEALRASGVTSSPHKCLTPKAGGGTTPVSSPSRSLRS
RQVAPAIEKVQAKFERTCCSPKYGSPKLQRKPLSKADQPNSRTSPGIPQKGFSESAWARSTTTRESPVHT
TINDGLSSLFNIIDHSPIGVRAGSRSRSAEPRQELGPGQETGTSSRGRSPSPLGVGSETFREEGGESTPV
RQDLSAPPGYTLTENVARILNKKLLEHALKEERKQASHGSSGLTSDSHTGEPVPAEPGSMENQTVLLTAP
WGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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