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Report for CCDS42078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42078.1 Public Homo sapiens 15 MESP2 24 110 108 CCDS HistoryNCBI Gene:145873Re-query CCDS DB by CCDS ID:42078.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42078.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341735.5 ENSP00000342392.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341735.5Link to Ensembl Protein Viewer:ENSP00000342392.3Re-query CCDS DB by Nucleotide ID:ENST00000341735Re-query CCDS DB by Protein ID:ENSP00000342392
Original member Current member NCBI NM_001039958.2 NP_001035047.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039958.2Link to Protein Sequence:NP_001035047.1Re-query CCDS DB by Nucleotide ID:NM_001039958Re-query CCDS DB by Protein ID:NP_001035047Link to BLAST:NP_001035047.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035047.1 397 Q0VG99 397 100% 0 0

Chromosomal Locations for CCDS 42078.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 89776358 89777281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89778065 89778334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGGCCCAGTCGCCTCCTCCGCAGAGCCTCCTCGGCCACGACCACTGGATCTTCGCCCAGGGCTGGGGCT
GGGCCGGCCACTGGGACTCCACGTCCCCGGCCTCCTCCTCCGATTCGTCGGGTTCGTGCCCCTGCGACGG
CGCCCGCGGACTCCCGCAGCCACAGCCTCCGAGCTGCAGCTCCCGAGCCGCAGAGGCAGCCGCGACGACG
CCCAGACGAGCGCGCACCGGACCAGCGGGCGGACAGCGGCAGAGCGCCAGCGAGCGGGAGAAACTGCGCA
TGCGCACGCTGGCCCGCGCCCTGCACGAGTTGCGCCGCTTTCTGCCTCCCTCCTTGGCGCCGGCCGGCCA
GAGCCTGACCAAGATCGAGACGCTGCGCCTGGCCATCCGCTACATCGGCCACCTATCGGCCGTGCTGGGT
CTCAGCGAGGAGAGTCTGCAGTGCCGGCGCAGGCAGCGCGGGGACGCGGGGTCCCCTTGGGGCTGCCCGC
TGTGCCCCGACCGTGGCCCCGCAGAGGCGCAGACGCAGGCGGAGGGGCAGGGGCAAGGGCAGGGGCAGGG
GCAGGGGCAAGGGCAGGGGCAAGGACAGGGGCAAGGACAGGGGCAAGGGCAGGGGCGCAGGCCGGGCCTG
GTCTCCGCCGTCCTCGCCGAGGCGTCCTGGGGATCCCCGTCCGCCTGCCCCGGAGCCCAAGCCGCACCCG
AGCGCCTGGGGAGGGGGGTCCACGACACGGATCCCTGGGCAACACCCCCTTACTGCCCCAAGATACAGTC
GCCCCCGTATTCGTCCCAAGGGACAACCTCCGACGCGTCTCTTTGGACGCCACCCCAAGGCTGTCCCTGG
ACGCAGTCGTCCCCAGAGCCCCGGAACCCACCAGTGCCCTGGACGGCGGCCCCAGCAACTTTGGAGCTGG
CCGCAGTGTACCAGGGTCTCTCTGTGTCTCCAGAGCCCTGTCTGTCGCTGGGAGCTCCATCTCTCCTGCC
CCACCCATCATGCCAGAGACTGCAGCCTCAGACCCCCGGGAGGTGCTGGAGCCACAGTGCAGAGGTGGTG
CCCAACTCAGAGGACCAGGGACCGGGCGCCGCCTTCCAGCTCAGTGAAGCAAGCCCTCCCCAGAGCTCAG
GCCTGCGGTTCAGTGGCTGCCCTGAACTTTGGCAAGAAGATCTGGAGGGGGCCCGCCTGGGCATCTTCTA
CTAA

Translation (397 aa):
MAQSPPPQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCSSRAAEAAATT
PRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLG
LSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQGQGQGQGQGQGQGQGQGQGQGQGQGRRPGL
VSAVLAEASWGSPSACPGAQAAPERLGRGVHDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPW
TQSSPEPRNPPVPWTAAPATLELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAEVV
PNSEDQGPGAAFQLSEASPPQSSGLRFSGCPELWQEDLEGARLGIFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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