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Report for CCDS27606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27606.1 Public Mus musculus 15 Txn2 23 108 98 CCDS HistoryNCBI Gene:56551Re-query CCDS DB by CCDS ID:27606.1Re-query CCDS DB by GeneID:56551See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27606.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005487.11 ENSMUSP00000005487.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005487.11Link to Ensembl Protein Viewer:ENSMUSP00000005487.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000005487Re-query CCDS DB by Protein ID:ENSMUSP00000005487
Original member Current member EBI ENSMUST00000109748.8 ENSMUSP00000105370.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109748.8Link to Ensembl Protein Viewer:ENSMUSP00000105370.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109748Re-query CCDS DB by Protein ID:ENSMUSP00000105370
Original member Current member NCBI NM_019913.5 NP_064297.1 Accepted alive Link to Nucleotide Sequence:NM_019913.5Link to Protein Sequence:NP_064297.1Re-query CCDS DB by Nucleotide ID:NM_019913Re-query CCDS DB by Protein ID:NP_064297Link to BLAST:NP_064297.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064297.1 166 P97493 166 100% 0 0

Chromosomal Locations for CCDS 27606.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77915744 77915857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77924543 77924666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77927692 77927954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGGCTCAGCGGCTCCTCCTGGGGAGGTTCCTGACCTCAGTCATCTCCAGGAAGCCTCCTCAGGGTGTGT
GGGCTTCCCTCACCTCTAAGACCCTGCAGACCCCTCAGTACAATGCTGGTGGTCTAACAGTAATGCCCAG
CCCAGCCCGGACAGTACACACCACCAGAGTCTGTTTGACGACCTTTAACGTCCAGGATGGACCTGACTTT
CAAGACAGAGTTGTCAACAGTGAGACACCAGTTGTTGTGGACTTTCATGCACAGTGGTGTGGCCCCTGCA
AGATCCTAGGACCGCGGCTAGAGAAGATGGTCGCCAAGCAGCACGGGAAGGTGGTCATGGCCAAAGTGGA
CATTGACGATCACACAGACCTTGCCATTGAATATGAGGTGTCAGCTGTGCCTACCGTGCTAGCCATCAAG
AACGGGGACGTGGTGGACAAGTTTGTGGGGATCAAGGACGAGGACCAGCTAGAAGCCTTCCTGAAGAAGC
TGATTGGCTGA

Translation (166 aa):
MAQRLLLGRFLTSVISRKPPQGVWASLTSKTLQTPQYNAGGLTVMPSPARTVHTTRVCLTTFNVQDGPDF
QDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIK
NGDVVDKFVGIKDEDQLEAFLKKLIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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