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Report for CCDS14903.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14903.1 Public Mus musculus 1 Pdcl3 23 108 98 CCDS HistoryNCBI Gene:68833Re-query CCDS DB by CCDS ID:14903.1Re-query CCDS DB by GeneID:68833See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 14903.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027247.10 ENSMUSP00000027247.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027247.10Link to Ensembl Protein Viewer:ENSMUSP00000027247.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027247Re-query CCDS DB by Protein ID:ENSMUSP00000027247
Original member Current member NCBI NM_026850.4 NP_081126.2 Accepted alive Link to Nucleotide Sequence:NM_026850.4Link to Protein Sequence:NP_081126.2Re-query CCDS DB by Nucleotide ID:NM_026850Re-query CCDS DB by Protein ID:NP_081126Link to BLAST:NP_081126.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081126.2 240 Q8BVF2 240 100% 0 0

Chromosomal Locations for CCDS 14903.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 38987844 38987849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38991246 38991375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38994915 38995005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38995245 38995388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38995735 38995943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38996141 38996283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGCAGGACCCCAATGCAGACACCGAGTGGAATGACATCCTACGTAAAAAGGGCATCCTTCCCCCGAAGG
AGAGCCTGAAGGAGCTGGAGGAGGAGGAGGCGGAGAAGGAGGAGCAGCTCCTCCAGCAGTCAGTGGTGAA
AACATACGAGGACATGACTCTGGAAGAGCTGGAGGAGAACGAGGATGAGTTCAGTGAGGAGGATGAACGA
GCTATCGAGATGTACCGGCAACAGAGGTTGGCTGAGTGGAAAGCAACTCAGCTGAAGAACAAATTTGGAG
AAGTTTTAGAGATCTCAGGAAAGGACTATGTTCAAGAAGTTACGAAAGCCGGCGAGGGCCTGTGGGTGAT
CTTACACCTGTACAAACAAGGGATTCCCCTCTGTTCCTTGATAAACCATCACTTGAGTGGACTCGCCAGG
AAGTTTCCCGATGTGAAATTTATCAAAGCCATTTCAACGACCTGCATACCCAACTACCCCGACAGGAATC
TCCCCACGGTGTTCGTCTACCGGGAAGGGGATATCAAGGCACAGTTCATTGGTCCTCTGGTGTTCGGTGG
CATGAACCTGACCATAGACGAGTTGGAGTGGAAACTGTCTGAGTCAGGAGCGATCAAGACAGCCCTGGAG
GAGAACCCCAAGAAGCCCATCCAGGACCTGCTGCTGTCCTCAGTCCGGGGCCCTGTCCCCATGAGGAGGG
ACAGTGATTCTGAGGACGACTAA

Translation (240 aa):
MQDPNADTEWNDILRKKGILPPKESLKELEEEEAEKEEQLLQQSVVKTYEDMTLEELEENEDEFSEEDER
AIEMYRQQRLAEWKATQLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLYKQGIPLCSLINHHLSGLAR
KFPDVKFIKAISTTCIPNYPDRNLPTVFVYREGDIKAQFIGPLVFGGMNLTIDELEWKLSESGAIKTALE
ENPKKPIQDLLLSSVRGPVPMRRDSDSEDD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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