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Report for CCDS32620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32620.1 Public Homo sapiens 17 SLFN13 24 110 108 CCDS HistoryNCBI Gene:146857Re-query CCDS DB by CCDS ID:32620.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32620.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285013.11 ENSP00000285013.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000285013.11Link to Ensembl Protein Viewer:ENSP00000285013.6Re-query CCDS DB by Nucleotide ID:ENST00000285013Re-query CCDS DB by Protein ID:ENSP00000285013
Original member Current member EBI ENST00000526861.5 ENSP00000434439.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526861.5Link to Ensembl Protein Viewer:ENSP00000434439.1Re-query CCDS DB by Nucleotide ID:ENST00000526861Re-query CCDS DB by Protein ID:ENSP00000434439
Original member Current member EBI ENST00000542635.5 ENSP00000444016.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542635.5Link to Ensembl Protein Viewer:ENSP00000444016.1Re-query CCDS DB by Nucleotide ID:ENST00000542635Re-query CCDS DB by Protein ID:ENSP00000444016
Original member Current member EBI ENST00000533791.5 ENSP00000467426.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533791.5Link to Ensembl Protein Viewer:ENSP00000467426.1Re-query CCDS DB by Nucleotide ID:ENST00000533791Re-query CCDS DB by Protein ID:ENSP00000467426
Original member Current member NCBI NM_144682.6 NP_653283.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144682.6Link to Protein Sequence:NP_653283.3Re-query CCDS DB by Nucleotide ID:NM_144682Re-query CCDS DB by Protein ID:NP_653283Link to BLAST:NP_653283.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653283.3 897 Q68D06-1 897 100% 0 0

Chromosomal Locations for CCDS 32620.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35440595 35441366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35441563 35442286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35443789 35443920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35444615 35445680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2694 nt):
ATGGAGGCAAATCACTGCTCCCTGGGTGTGTATCCATCTTACCCAGACCTGGTCATCGATGTCGGAGAAG
TGACTCTGGGAGAAGAAAACAGAAAAAAGCTACAGAAAACTCAGAGAGACCAAGAGAGGGCGAGAGTTAT
ACGGGCCGCGTGTGCTTTATTAAACTCAGGAGGAGGAGTGATTCAGATGGAAATGGCCAACAGGGATGAG
CGTCCCACAGAGATGGGACTGGATTTAGAAGAATCCTTGAGAAAGCTTATTCAGTATCCATATTTGCAGG
CTTTCTTTGAGACTAAGCAACACGGAAGGTGTTTTTATATTTTTGTTAAATCTTGGAGTGGTGATCCTTT
CCTTAAAGATGGTTCTTTCAATTCCCGCATTTGCAGCCTTAGTTCTTCATTATACTGTAGATCTGGCACC
TCTGTGCTTCACATGAATTCAAGACAGGCATTCGATTTCCTGAAGACCAAGGAAAGACAGTCCAAATATA
ATCTGATTAATGAAGGGTCTCCACCTAGTAAAATTATGAAAGCTGTATACCAGAACATATCTGAGTCAAA
TCCTGCATATGAAGTTTTCCAAACTGACACTATTGAATATGGTGAAATCCTATCTTTTCCTGAGTCTCCA
TCCATAGAGTTTAAACAGTTCTCTACAAAACATATCCAACAATATGTAGAAAATATAATTCCAGAGTACA
TCTCTGCATTTGCAAACACTGAGGGAGGCTATCTTTTTATTGGAGTGGATGATAAGAGTAGGAAAGTCCT
GGGATGTGCCAAAGAACAGGTTGACCCTGACTCTTTGAAAAATGTAATTGCAAGAGCAATTTCTAAGTTG
CCCATTGTTCATTTTTGCTCTTCAAAACCTCGGGTAGAGTACAGCACCAAAATCGTAGAAGTGTTTTGTG
GGAAAGAGTTGTATGGCTATCTCTGTGTGATTAAAGTGAAGGCATTCTGTTGTGTGGTGTTCTCGGAAGC
TCCCAAGTCATGGATGGTGAGGGAGAAGTACATCCGCCCCTTGACAACTGAGGAATGGGTAGAGAAAATG
ATGGACGCAGATCCAGAGTTTCCTCCAGACTTTGCTGAGGCCTTTGAGTCTCAGTTGAGTCTATCTGACA
GTCCTTCACTTTGCAGACCAGTGTATTCTAAGAAAGGTCTGGAACACAAAGCTGATCTACAACAACATTT
ATTTCCAGTTCCACCAGGACATTTGGAATGTACTCCAGAGTCCCTCTGGAAGGAGCTGTCTTTACAGCAT
GAAGGACTAAAGGAGTTAATACACAAGCAAATGCGACCTTTCTCCCAGGGAATTGTGATCCTCTCTAGAA
GCTGGGCTGTGGACCTGAACTTGCAGGAGAAGCCAGGAGTCATCTGTGATGCTCTGCTGATAGCACAGAA
CAGCACCCCCATTCTCTACACCATTCTCAGGGAGCAGGATGCAGAGGGCCAGGACTACTGCACTCGCACC
GCCTTTACTTTGAAGCAGAAGCTAGTGAACATGGGGGGCTACACCGGGAAGGTGTGTGTCAGGGCCAAGG
TCCTCTGCCTGAGTCCTGAGAGCAGCGCAGAGGCCTTGGAGGCTGCAGTGTCTCCGATGGATTACCCTGC
GTCCTATAGCCTTGCAGGCACCCAGCACATGGAAGCCCTGCTGCAGTCCCTCGTGATTGTCTTACTCGGC
TTCAGGTCTCTCTTGAGTGACCAGCTCGGCTGTGAGGTTTTAAATCTGCTCACAGCCCAGCAGTATGAGA
TATTCTCCAGAAGCCTCCGCAAGAACAGAGAGTTGTTTGTCCACGGCTTACCTGGCTCAGGGAAGACCAT
CATGGCCATGAAGATCATGGAGAAGATCAGGAATGTGTTTCACTGTGAGGCACACAGAATTCTCTACGTT
TGTGAAAACCAGCCTCTGAGGAACTTTATCAGTGATAGAAATATCTGCCGAGCAGAGACCCGGGAAACTT
TCCTAAGAGAAAAATTTGAACACATTCAACACATCGTCATTGACGAAGCTCAGAATTTCCGTACTGAAGA
TGGGGACTGGTATAGGAAGGCAAAAACCATCACTCAGAGAGAAAAGGATTGTCCAGGAGTTCTCTGGATC
TTTCTGGACTACTTTCAGACCAGTCACTTGGGTCACAGTGGCCTTCCCCCTCTCTCAGCACAGTATCCAA
GAGAAGAGCTCACCAGAGTAGTTCGCAATGCAGATGAAATAGCCGAGTACATACAACAAGAAATGCAACT
AATTATAGAAAATCCTCCAATTAATATCCCCCATGGGTATCTGGCAATTCTCAGTGAAGCTAAATGGGTT
CCAGGTGTTCCAGGCAACACAAAGATTATTAAAAACTTTACTTTGGAGCAAATAGTGACCTATGTGGCAG
ACACCTGCAGGTGCTTCTTTGAAAGGGGCTATTCTCCAAAGGATGTTGCTGTGCTTGTCAGCACCGTGAC
AGAAGTGGAGCAGTATCAGTCTAAGCTCTTGAAAGCAATGAGGAAGAAAATGGTGGTGCAGCTCAGTGAT
GCATGTGATATGTTGGGTGTGCACATTGTGTTGGACAGTGTCCGGCGATTCTCAGGCCTGGAAAGGAGCA
TAGTGTTTGGGATCCATCCAAGGACAGCTGACCCAGCTATCTTACCCAATATTCTGATCTGTCTGGCTTC
CAGGGCAAAACAGCACCTATATATTTTTCTGTGA

Translation (897 aa):
MEANHCSLGVYPSYPDLVIDVGEVTLGEENRKKLQKTQRDQERARVIRAACALLNSGGGVIQMEMANRDE
RPTEMGLDLEESLRKLIQYPYLQAFFETKQHGRCFYIFVKSWSGDPFLKDGSFNSRICSLSSSLYCRSGT
SVLHMNSRQAFDFLKTKERQSKYNLINEGSPPSKIMKAVYQNISESNPAYEVFQTDTIEYGEILSFPESP
SIEFKQFSTKHIQQYVENIIPEYISAFANTEGGYLFIGVDDKSRKVLGCAKEQVDPDSLKNVIARAISKL
PIVHFCSSKPRVEYSTKIVEVFCGKELYGYLCVIKVKAFCCVVFSEAPKSWMVREKYIRPLTTEEWVEKM
MDADPEFPPDFAEAFESQLSLSDSPSLCRPVYSKKGLEHKADLQQHLFPVPPGHLECTPESLWKELSLQH
EGLKELIHKQMRPFSQGIVILSRSWAVDLNLQEKPGVICDALLIAQNSTPILYTILREQDAEGQDYCTRT
AFTLKQKLVNMGGYTGKVCVRAKVLCLSPESSAEALEAAVSPMDYPASYSLAGTQHMEALLQSLVIVLLG
FRSLLSDQLGCEVLNLLTAQQYEIFSRSLRKNRELFVHGLPGSGKTIMAMKIMEKIRNVFHCEAHRILYV
CENQPLRNFISDRNICRAETRETFLREKFEHIQHIVIDEAQNFRTEDGDWYRKAKTITQREKDCPGVLWI
FLDYFQTSHLGHSGLPPLSAQYPREELTRVVRNADEIAEYIQQEMQLIIENPPINIPHGYLAILSEAKWV
PGVPGNTKIIKNFTLEQIVTYVADTCRCFFERGYSPKDVAVLVSTVTEVEQYQSKLLKAMRKKMVVQLSD
ACDMLGVHIVLDSVRRFSGLERSIVFGIHPRTADPAILPNILICLASRAKQHLYIFL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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