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Report for CCDS58683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58683.1 Public Homo sapiens 19 SMIM17 24 110 108 CCDS HistoryNCBI Gene:147670Re-query CCDS DB by CCDS ID:58683.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58683.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000598409.6 ENSP00000471126.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000598409.6Link to Ensembl Protein Viewer:ENSP00000471126.1Re-query CCDS DB by Nucleotide ID:ENST00000598409Re-query CCDS DB by Protein ID:ENSP00000471126
Original member Current member NCBI NM_001193628.2 NP_001180557.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001193628.2Link to Protein Sequence:NP_001180557.1Re-query CCDS DB by Nucleotide ID:NM_001193628Re-query CCDS DB by Protein ID:NP_001180557Link to BLAST:NP_001180557.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180557.1 118 P0DL12 118 100% 0 0

Chromosomal Locations for CCDS 58683.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 56645668 56645836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56647558 56647634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56655103 56655213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGCAGAGTCTCAGGCCTGAGCAGACACGGGGGCTGCTGGAGCCTGAGAGGACCAAGACTCTGCTGCCTC
GGGAGAGCCGGGCCTGGGAGAAGCCTCCTCATCCCGCCTGCACCAAAGACTGGGAGGCTGTGGAGGTTGG
GGCCTCCAGCCATGACAGTGATGAGAAAGACCTGTCTTCTCAAGAGACTGGGCTTTCCCAGGAGTGGAGC
TCGGTGGAGGAAGATGACGAATCAGAGGGCTCCCAGGGCTTTGTGGAGTGGTCAAAAGCTCCACAACAAA
CAACCATAGTCTTGGTAGTGTGCGTGCTTTTTTTGTTCCTGGTTTTAACGGGGATGCCTATGATGTTTCA
CATTTAA

Translation (118 aa):
MQSLRPEQTRGLLEPERTKTLLPRESRAWEKPPHPACTKDWEAVEVGASSHDSDEKDLSSQETGLSQEWS
SVEEDDESEGSQGFVEWSKAPQQTTIVLVVCVLFLFLVLTGMPMMFHI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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