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Report for CCDS12936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12936.1 Public Homo sapiens 19 NLRP4 24 110 108 CCDS HistoryNCBI Gene:147945Re-query CCDS DB by CCDS ID:12936.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12936.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301295.11 ENSP00000301295.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301295.11Link to Ensembl Protein Viewer:ENSP00000301295.4Re-query CCDS DB by Nucleotide ID:ENST00000301295Re-query CCDS DB by Protein ID:ENSP00000301295
Original member Current member NCBI NM_134444.5 NP_604393.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_134444.5Link to Protein Sequence:NP_604393.2Re-query CCDS DB by Nucleotide ID:NM_134444Re-query CCDS DB by Protein ID:NP_604393Link to BLAST:NP_604393.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_604393.2 994 Q96MN2-1 994 100% 0 0

Chromosomal Locations for CCDS 12936.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55852081 55852360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55857674 55859249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55861386 55861547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55861992 55862159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55867709 55867876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55870827 55870997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55876996 55877166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55878794 55878964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55881470 55881587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2985 nt):
ATGGCAGCCTCTTTCTTCTCTGATTTTGGTCTTATGTGGTATCTGGAGGAGCTCAAAAAGGAGGAGTTCA
GGAAATTTAAAGAACATCTCAAGCAAATGACTTTGCAGCTTGAACTCAAGCAGATTCCCTGGACTGAGGT
CAAAAAAGCATCCCGGGAAGAACTTGCAAACCTCTTGATCAAGCACTATGAAGAACAACAAGCTTGGAAC
ATAACCTTAAGAATCTTTCAAAAGATGGATAGAAAGGATCTCTGCATGAAGGTCATGAGGGAGAGAACAG
GATACACAAAGACCTATCAAGCTCACGCAAAGCAGAAATTCAGCCGCTTATGGTCCAGCAAGTCTGTCAC
TGAGATTCACCTATACTTTGAGGAGGAAGTCAAGCAAGAAGAATGTGACCATTTGGACCGCCTTTTTGCT
CCCAAGGAAGCTGGGAAACAGCCACGTACAGTGATCATTCAAGGACCACAAGGAATTGGAAAAACGACAC
TCCTGATGAAGCTGATGATGGCCTGGTCGGACAACAAGATCTTTCGGGATAGGTTCCTGTACACGTTCTA
TTTCTGCTGCAGAGAACTGAGGGAGTTGCCGCCAACGAGTTTGGCTGACTTGATTTCCAGAGAGTGGCCT
GACCCCGCTGCTCCTATAACAGAGATCGTGTCTCAACCGGAGAGACTCTTGTTCGTCATCGACAGCTTCG
AAGAGCTGCAGGGCGGCTTGAACGAACCCGATTCGGATCTGTGTGGTGACTTGATGGAGAAACGGCCGGT
GCAGGTGCTTCTGAGCAGTTTGCTGAGGAAGAAGATGCTCCCGGAGGCCTCCCTGCTCATCGCTATCAAA
CCCGTGTGCCCGAAGGAGCTCCGGGATCAGGTGACGATCTCAGAAATCTACCAGCCCCGGGGATTCAACG
AGAGTGATAGGTTAGTGTATTTCTGCTGTTTCTTCAAAGACCCGAAAAGAGCCATGGAAGCCTTCAATCT
TGTAAGAGAAAGTGAACAGCTGTTTTCCATATGCCAAATCCCGCTCCTCTGCTGGATCCTGTGTACCAGT
CTGAAGCAAGAGATGCAGAAAGGAAAAGACCTGGCCCTGACCTGCCAGAGCACTACCTCTGTGTACTCCT
CTTTCGTCTTTAACCTGTTCACACCTGAGGGTGCCGAGGGCCCGACTCCGCAAACCCAGCACCAGCTGAA
GGCCCTGTGCTCCCTGGCTGCAGAGGGTATGTGGACAGACACATTTGAGTTTTGTGAAGACGACCTCCGG
AGAAATGGGGTTGTTGACGCTGACATCCCTGCGCTGCTGGGCACCAAGATACTTCTGAAGTACGGGGAGC
GTGAGAGCTCCTACGTGTTCCTCCACGTGTGTATCCAGGAGTTCTGTGCCGCCTTGTTCTATTTGCTCAA
GAGCCACCTTGATCATCCTCACCCAGCTGTGAGATGTGTACAGGAATTGCTAGTTGCCAATTTTGAAAAA
GCAAGGAGAGCACATTGGATTTTTTTGGGGTGTTTTCTAACTGGCCTTTTAAATAAAAAGGAACAAGAAA
AACTGGATGCGTTTTTTGGCTTCCAACTGTCCCAAGAGATAAAGCAGCAAATTCACCAGTGCCTGAAGAG
CTTAGGGGAGCGTGGCAATCCTCAGGGACAGGTGGATTCCTTGGCGATATTTTACTGTCTCTTTGAAATG
CAGGATCCTGCCTTTGTGAAGCAGGCAGTGAACCTCCTCCAAGAAGCTAACTTTCATATTATTGACAACG
TGGACTTGGTGGTTTCTGCCTACTGCTTAAAATACTGCTCCAGCTTGAGGAAACTCTGTTTTTCCGTTCA
AAATGTCTTTAAGAAAGAGGATGAACACAGCTCTACGTCGGATTACAGCCTCATCTGTTGGCATCACATC
TGCTCTGTGCTCACCACCAGCGGGCACCTCAGAGAGCTCCAGGTGCAGGACAGCACCCTCAGCGAGTCGA
CCTTTGTGACCTGGTGTAACCAGCTGAGGCATCCCAGCTGTCGCCTTCAGAAGCTTGGAATAAATAACGT
TTCCTTTTCTGGCCAGAGTGTTCTGCTCTTTGAGGTGCTCTTTTATCAGCCAGACTTGAAATACCTGAGC
TTCACCCTCACGAAACTCTCTCGTGATGACATCAGGTCCCTCTGTGATGCCTTGAACTACCCAGCAGGCA
ACGTCAAAGAGCTAGCGCTGGTAAATTGTCACCTCTCACCCATTGATTGTGAAGTCCTTGCTGGCCTTCT
AACCAACAACAAGAAGCTGACGTATCTGAATGTATCCTGCAACCAGTTAGACACAGGCGTGCCCCTTTTG
TGTGAAGCCCTGTGCAGCCCAGACACGGTCCTGGTATACCTGATGTTGGCTTTCTGCCACCTCAGCGAGC
AGTGCTGCGAATACATCTCTGAAATGCTTCTGCGTAACAAGAGCGTGCGCTATCTAGACCTCAGTGCCAA
TGTCCTGAAGGACGAAGGACTGAAAACTCTCTGCGAGGCCTTGAAACATCCGGACTGCTGCCTGGATTCA
CTGTGTTTGGTAAAATGTTTTATCACTGCTGCTGGCTGTGAAGACCTCGCCTCTGCTCTCATCAGCAATC
AAAACCTGAAGATTCTGCAAATTGGGTGCAATGAAATCGGAGATGTGGGTGTGCAGCTGTTGTGTCGGGC
TCTGACGCATACGGATTGCCGCTTAGAGATTCTTGGGTTGGAAGAATGTGGGTTAACGAGCACCTGCTGT
AAGGATCTCGCGTCTGTTCTCACCTGCAGTAAGACCCTGCAGCAGCTCAACCTGACCTTGAACACCTTGG
ACCACACAGGGGTGGTTGTACTCTGTGAGGCCCTGAGACACCCAGAGTGTGCCCTGCAGGTGCTCGGGCT
GAGAAAAACTGATTTTGATGAGGAAACCCAGGCACTTCTGACGGCTGAGGAAGAGAGAAATCCTAACCTG
ACCATCACAGACGACTGTGACACAATCACAAGGGTAGAGATCTGA

Translation (994 aa):
MAASFFSDFGLMWYLEELKKEEFRKFKEHLKQMTLQLELKQIPWTEVKKASREELANLLIKHYEEQQAWN
ITLRIFQKMDRKDLCMKVMRERTGYTKTYQAHAKQKFSRLWSSKSVTEIHLYFEEEVKQEECDHLDRLFA
PKEAGKQPRTVIIQGPQGIGKTTLLMKLMMAWSDNKIFRDRFLYTFYFCCRELRELPPTSLADLISREWP
DPAAPITEIVSQPERLLFVIDSFEELQGGLNEPDSDLCGDLMEKRPVQVLLSSLLRKKMLPEASLLIAIK
PVCPKELRDQVTISEIYQPRGFNESDRLVYFCCFFKDPKRAMEAFNLVRESEQLFSICQIPLLCWILCTS
LKQEMQKGKDLALTCQSTTSVYSSFVFNLFTPEGAEGPTPQTQHQLKALCSLAAEGMWTDTFEFCEDDLR
RNGVVDADIPALLGTKILLKYGERESSYVFLHVCIQEFCAALFYLLKSHLDHPHPAVRCVQELLVANFEK
ARRAHWIFLGCFLTGLLNKKEQEKLDAFFGFQLSQEIKQQIHQCLKSLGERGNPQGQVDSLAIFYCLFEM
QDPAFVKQAVNLLQEANFHIIDNVDLVVSAYCLKYCSSLRKLCFSVQNVFKKEDEHSSTSDYSLICWHHI
CSVLTTSGHLRELQVQDSTLSESTFVTWCNQLRHPSCRLQKLGINNVSFSGQSVLLFEVLFYQPDLKYLS
FTLTKLSRDDIRSLCDALNYPAGNVKELALVNCHLSPIDCEVLAGLLTNNKKLTYLNVSCNQLDTGVPLL
CEALCSPDTVLVYLMLAFCHLSEQCCEYISEMLLRNKSVRYLDLSANVLKDEGLKTLCEALKHPDCCLDS
LCLVKCFITAAGCEDLASALISNQNLKILQIGCNEIGDVGVQLLCRALTHTDCRLEILGLEECGLTSTCC
KDLASVLTCSKTLQQLNLTLNTLDHTGVVVLCEALRHPECALQVLGLRKTDFDEETQALLTAEEERNPNL
TITDDCDTITRVEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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