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Report for CCDS20648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20648.1 Public Mus musculus 6 Grin2b 23 108 98 CCDS HistoryNCBI Gene:14812Re-query CCDS DB by CCDS ID:20648.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20648.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053880.12 ENSMUSP00000062284.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053880.12Link to Ensembl Protein Viewer:ENSMUSP00000062284.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053880Re-query CCDS DB by Protein ID:ENSMUSP00000062284
Original member Current member EBI ENSMUST00000111905.7 ENSMUSP00000107536.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111905.7Link to Ensembl Protein Viewer:ENSMUSP00000107536.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111905Re-query CCDS DB by Protein ID:ENSMUSP00000107536
Original member Current member NCBI NM_001363750.1 NP_001350679.1 Accepted alive Link to Nucleotide Sequence:NM_001363750.1Link to Protein Sequence:NP_001350679.1Re-query CCDS DB by Nucleotide ID:NM_001363750Re-query CCDS DB by Protein ID:NP_001350679Link to BLAST:NP_001350679.1
Original member Current member NCBI NM_008171.4 NP_032197.3 Accepted alive Link to Nucleotide Sequence:NM_008171.4Link to Protein Sequence:NP_032197.3Re-query CCDS DB by Nucleotide ID:NM_008171Re-query CCDS DB by Protein ID:NP_032197Link to BLAST:NP_032197.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350679.1 1482 Q01097 1482 99.9325% 0 1
NP_032197.3 1482 Q01097 1482 99.9325% 0 1

Chromosomal Locations for CCDS 20648.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 135732098 135733948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135736284 135736522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135738959 135739146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135740922 135741082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135772193 135772422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135774783 135774908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135778661 135778814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135779226 135779397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135780134 135780336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135843088 135843202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135922872 135923470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136043891 136044301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4449 nt):
ATGAAGCCCAGCGCAGAGTGCTGTTCTCCCAAGTTCTGGTTGGTGTTGGCCGTCTTGGCCGTATCGGGCA
GCAAAGCTCGTTCCCAAAAGAGCGCCCCCAGCATCGGCATCGCTGTCATCCTCGTGGGCACTTCCGACGA
AGTGGCCATAAAAGATGCCCACGAGAAAGATGACTTCCATCATCTCTCAGTAGTTCCCCGGGTGGAGCTG
GTAGCCATGAACGAGACTGACCCAAAGAGCATAATCACCCGCATCTGCGATCTTATGTCTGACCGGAAGA
TCCAGGGGGTGGTGTTCGCGGATGACACGGACCAGGAAGCCATCGCCCAGATCCTCGATTTCATTTCTGC
TCAGACTCTCACCCCCATCCTGGGCATCCATGGGGGCTCATCTATGATAATGGCAGATAAGGATGAGTCC
TCCATGTTCTTCCAGTTTGGCCCATCCATTGAACAGCAAGCTTCTGTCATGCTCAACATCATGGAAGAAT
ACGACTGGTACATCTTCTCCATCGTCACCACCTACTTCCCCGGCTACCAGGACTTCGTGAACAAGATCCG
CAGCACTATTGAGAACAGCTTTGTGGGCTGGGAGCTCGAGGAAGTCCTCCTGCTAGACATGTCTCTAGAC
GATGGCGACTCTAAGATCCAGAATCAGCTGAAGAAGCTGCAGAGCCCCATCATTCTCCTCTACTGCACAA
AGGAAGAAGCCACCTACATCTTCGAAGTAGCTAACTCAGTTGGGCTGACTGGCTACGGCTACACATGGAT
CGTGCCGAGTCTGGTGGCGGGGGATACGGACACGGTGCCTTCAGAGTTCCCCACGGGGCTCATCTCTGTG
TCATATGACGAATGGGACTATGGCCTTCCTGCCAGAGTGAGAGATGGGATTGCCATCATCACCACTGCTG
CCTCGGACATGCTGTCCGAACACAGTTTCATCCCTGAGCCCAAGAGCAGTTGCTACAACACCCACGAGAA
GAGGATCTACCAGTCTAACATGCTGAATAGGTATCTGATCAACGTCACTTTTGAAGGGAGAAACCTGTCC
TTCAGTGAAGATGGCTACCAGATGCATCCGAAGCTGGTGATAATCCTTCTGAACAAGGAGAGGAAGTGGG
AGAGGGTGGGAAAATGGAAAGACAAGTCCCTGCAGATGAAATACTATGTGTGGCCTCGAATGTGTCCTGA
GACTGAAGAACAGGAAGATGACCATCTGAGCATCGTTACCTTGGAGGAGGCACCGTTTGTCATTGTGGAA
AGTGTGGACCCTCTCAGTGGGACCTGCATGCGGAATACAGTCCCGTGCCAGAAGCGCATCATCTCTGAGA
ATAAAACAGATGAGGAACCAGGCTACATCAAAAAATGCTGCAAGGGGTTTTGTATTGATATCCTTAAGAA
AATTTCTAAGTCTGTGAAGTTCACCTATGACCTTTACCTGGTGACCAATGGCAAGCATGGAAAGAAAATC
AACGGGACCTGGAACGGCATGATTGGTGAGGTGGTCATGAAGAGGGCCTATATGGCAGTGGGATCACTAA
CTATCAATGAAGAACGGTCAGAGGTGGTTGACTTCTCTGTGCCCTTCATAGAGACTGGCATCAGTGTCAT
GGTATCACGCAGCAATGGGACTGTGTCACCTTCTGCCTTCTTAGAGCCATTCAGTGCTGACGTGTGGGTG
ATGATGTTTGTGATGCTGCTCATTGTCTCTGCTGTAGCTGTCTTTGTCTTTGAATACTTCAGCCCTGTGG
GTTACAACCGGTGCCTAGCTGATGGCAGAGAGCCAGGCGGCCCATCTTTCACCATCGGCAAAGCGATTTG
GTTACTCTGGGGTCTGGTGTTTAACAACTCCGTACCTGTGCAGAACCCAAAGGGGACCACCTCCAAGATC
ATGGTGTCAGTGTGGGCCTTCTTTGCTGTCATTTTCCTGGCCAGCTACACTGCCAACTTAGCCGCCTTCA
TGATCCAAGAGGAGTATGTGGACCAGGTTTCCGGCCTGAGTGACAAGAAGTTCCAGAGACCTAATGACTT
CTCACCCCCTTTCCGCTTTGGGACTGTGCCCAATGGCAGCACAGAGAGGAATATCCGTAATAACTATGCA
GAAATGCATGCCTACATGGGAAAGTTCAACCAAAGGGGTGTAGATGATGCCTTGCTCTCCCTGAAAACAG
GGAAACTTGATGCATTCATCTACGATGCAGCCGTGCTCAACTACATGGCTGGAAGAGACGAAGGCTGCAA
GCTGGTGACCATTGGCAGTGGCAAGGTCTTTGCTTCTACGGGCTATGGCATTGCTATCCAAAAAGACTCT
GGTTGGAAACGCCAGGTGGACCTTGCTATCCTGCAGCTGTTTGGAGATGGGGAGATGGAAGAACTGGAAG
CTCTCTGGCTCACTGGCATTTGCCACAATGAGAAGAATGAGGTTATGAGCAGCCAGCTGGACATTGACAA
CATGGCGGGCGTCTTCTATATGTTGGGGGCAGCCATGGCTCTCAGCCTCATCACCTTCATCTGTGAACAT
CTCTTCTATTGGCAGTTCCGACATTGCTTCATGGGTGTCTGTTCTGGCAAGCCTGGCATGGTCTTCTCCA
TCAGCAGAGGTATCTACAGCTGTATCCACGGAGTAGCTATAGAGGAGCGCCAATCCGTGATGAACTCCCC
CACTGCCACCATGAACAACACACACTCCAATATCCTACGCTTGCTCCGAACGGCCAAAAACATGGCCAAC
CTGTCTGGAGTCAACGGCTCCCCCCAGAGTGCCCTGGACTTCATCCGCCGTGAGTCCTCTGTCTATGACA
TCTCTGAGCATCGCCGCAGCTTCACGCATTCAGACTGCAAGTCGTACAATAACCCACCCTGTGAGGAAAA
CCTGTTCAGTGACTACATTAGTGAGGTAGAGAGAACATTTGGCAACCTGCAGCTGAAGGACAGCAATGTG
TACCAAGACCACTATCACCATCACCACCGGCCCCACAGCATCGGCAGCACCAGCTCCATTGATGGGCTCT
ATGACTGTGACAACCCACCCTTTACCACCCAGCCCAGGTCAATCAGCAAGAAACCCCTGGACATTGGCCT
GCCCTCCTCCAAACACAGCCAGCTCAGCGACCTGTACGGCAAGTTCTCTTTCAAGAGTGACCGCTACAGT
GGCCATGATGACTTGATTCGATCAGATGTCTCAGACATCTCCACGCATACTGTCACCTATGGCAACATCG
AGGGCAACGCAGCCAAGAGGAGGAAGCAGCAATATAAGGACAGTCTAAAGAAGCGGCCAGCCTCGGCCAA
ATCTAGGAGGGAGTTTGATGAAATCGAGCTGGCCTACCGTCGCCGACCACCCCGCTCCCCAGACCACAAG
CGCTACTTCAGGGACAAAGAAGGGCTCCGAGACTTCTACCTGGACCAGTTCCGAACAAAGGAGAACTCGC
CTCACTGGGAGCACGTGGACTTGACTGACATTTACAAAGAACGTAGTGATGACTTCAAGCGAGATTCGGT
CAGTGGAGGCGGGCCCTGTACCAACAGGTCTCACCTTAAACACGGAACAGGCGATAAGCACGGAGTGGTA
GGCGGGGTGCCTGCTCCTTGGGAGAAGAACCTGACCAATGTGGATTGGGAGGATAGGTCTGGGGGCAACT
TCTGCCGCAGCTGTCCCTCCAAGCTGCACAATTACTCCTCTACGGTGGCAGGGCAAAACTCGGGCCGGCA
GGCCTGCATCAGGTGTGAGGCCTGCAAGAAGGCTGGCAACCTGTATGACATCAGCGAGGACAACTCCCTG
CAGGAACTGGACCAGCCTGCTGCCCCTGTGGCTGTGTCATCCAACGCCTCCACCACCAAGTATCCTCAAA
GCCCGACTAATTCCAAGGCCCAGAAGAAGAATCGGAACAAACTGCGCCGGCAGCACTCCTACGACACCTT
CGTGGACCTGCAGAAGGAGGAGGCCGCCTTGGCCCCACGCAGCGTGAGCCTGAAAGACAAGGGCCGATTC
ATGGATGGGAGCCCCTACGCCCATATGTTTGAGATGCCAGCTGGTGAGAGCTCCTTTGCCAACAAGTCCT
CAGTGACCACTGCCGGACACCATCACAACAATCCCGGCAGCGGCTACATGCTCAGCAAGTCGCTCTACCC
TGACCGGGTCACGCAAAACCCTTTCATCCCCACTTTTGGGGATGATCAGTGCTTGCTTCACGGCAGCAAA
TCCTACTTCTTCAGGCAGCCCACGGTGGCAGGGGCGTCGAAAACAAGGCCGGACTTCCGGGCCCTTGTCA
CCAATAAGCCAGTGGTGTCAGCCCTTCATGGGGCTGTGCCAGGTCGTTTCCAGAAGGACATTTGTATAGG
GAACCAGTCCAACCCCTGTGTGCCTAACAACAAAAACCCCAGGGCTTTCAATGGCTCCAGCAATGGACAT
GTTTATGAGAAACTTTCTAGTATTGAGTCTGATGTCTGA

Translation (1482 aa):
MKPSAECCSPKFWLVLAVLAVSGSKARSQKSAPSIGIAVILVGTSDEVAIKDAHEKDDFHHLSVVPRVEL
VAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDES
SMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLD
DGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPSEFPTGLISV
SYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRNLS
FSEDGYQMHPKLVIILLNKERKWERVGKWKDKSLQMKYYVWPRMCPETEEQEDDHLSIVTLEEAPFVIVE
SVDPLSGTCMRNTVPCQKRIISENKTDEEPGYIKKCCKGFCIDILKKISKSVKFTYDLYLVTNGKHGKKI
NGTWNGMIGEVVMKRAYMAVGSLTINEERSEVVDFSVPFIETGISVMVSRSNGTVSPSAFLEPFSADVWV
MMFVMLLIVSAVAVFVFEYFSPVGYNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKI
MVSVWAFFAVIFLASYTANLAAFMIQEEYVDQVSGLSDKKFQRPNDFSPPFRFGTVPNGSTERNIRNNYA
EMHAYMGKFNQRGVDDALLSLKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQKDS
GWKRQVDLAILQLFGDGEMEELEALWLTGICHNEKNEVMSSQLDIDNMAGVFYMLGAAMALSLITFICEH
LFYWQFRHCFMGVCSGKPGMVFSISRGIYSCIHGVAIEERQSVMNSPTATMNNTHSNILRLLRTAKNMAN
LSGVNGSPQSALDFIRRESSVYDISEHRRSFTHSDCKSYNNPPCEENLFSDYISEVERTFGNLQLKDSNV
YQDHYHHHHRPHSIGSTSSIDGLYDCDNPPFTTQPRSISKKPLDIGLPSSKHSQLSDLYGKFSFKSDRYS
GHDDLIRSDVSDISTHTVTYGNIEGNAAKRRKQQYKDSLKKRPASAKSRREFDEIELAYRRRPPRSPDHK
RYFRDKEGLRDFYLDQFRTKENSPHWEHVDLTDIYKERSDDFKRDSVSGGGPCTNRSHLKHGTGDKHGVV
GGVPAPWEKNLTNVDWEDRSGGNFCRSCPSKLHNYSSTVAGQNSGRQACIRCEACKKAGNLYDISEDNSL
QELDQPAAPVAVSSNASTTKYPQSPTNSKAQKKNRNKLRRQHSYDTFVDLQKEEAALAPRSVSLKDKGRF
MDGSPYAHMFEMPAGESSFANKSSVTTAGHHHNNPGSGYMLSKSLYPDRVTQNPFIPTFGDDQCLLHGSK
SYFFRQPTVAGASKTRPDFRALVTNKPVVSALHGAVPGRFQKDICIGNQSNPCVPNNKNPRAFNGSSNGH
VYEKLSSIESDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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