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Report for CCDS17951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17951.1 Public Mus musculus 4 Sdcbp 23 108 98 CCDS HistoryNCBI Gene:53378Re-query CCDS DB by CCDS ID:17951.1Re-query CCDS DB by GeneID:53378See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17951.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103008.11 ENSMUSP00000100073.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103008.11Link to Ensembl Protein Viewer:ENSMUSP00000100073.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000103008Re-query CCDS DB by Protein ID:ENSMUSP00000100073
Original member NCBI NM_016807.2 NP_058087.2 Updated not alive Link to Nucleotide Sequence:NM_016807.2Link to Protein Sequence:NP_058087.2Re-query CCDS DB by Nucleotide ID:NM_016807Re-query CCDS DB by Protein ID:NP_058087
Current member NCBI NM_016807.3 NP_058087.2 Accepted alive Link to Nucleotide Sequence:NM_016807.3Link to Protein Sequence:NP_058087.2Re-query CCDS DB by Nucleotide ID:NM_016807Re-query CCDS DB by Protein ID:NP_058087Link to BLAST:NP_058087.2

Chromosomal Locations for CCDS 17951.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 6377092 6377142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6378966 6379047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6380990 6381099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6385029 6385187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6386533 6386708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6392946 6393117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6393637 6393728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6394510 6394564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGTCTCTTTATCCATCTCTTGAAGATTTGAAGGTAGACAAAGTAATTCAGGCTCAAACTGCTTATTCTG
CCAATCCCGCCAGCCAAGCATTTGTTCTGGTGGATGCTTCTGCTGCTCTCCCTCCAGATGGAAATCTGTA
TCCTAAACTGTATCCAGAGCTCTCTCAATACATGGGACTGTCTTTAAATGAAGCTGAAATATGTGAGAGC
ATGCCCATGGTCTCTGGAGCACCAGCACAAGGGTTGGTAGCAAGACCATCCAGTGTGAACTATATGGTAG
CACCTGTGACAGGTAACGATGCTGGAATTCGGAGAGCAGAAATTAAGCAAGGGATCCGTGAAGTTATTTT
GTGTAAGGATCAAGATGGAAAAATTGGGCTCAGACTTAAGTCAATAGATAATGGTATATTTGTTCAACTC
GTCCAGGCTAATTCCCCAGCCTCCTTGGTTGGACTGAGATTTGGGGACCAGGTGCTCCAGATCAACGGTG
AAAACTGTGCGGGCTGGAGCTCTGATAAGGCACACAAGGTGCTCAAGCAGGCGTTTGGAGAGAAGATCAC
CATGACGATCCGTGACAGGCCCTTTGAACGGACAGTTACTATGCATAAGGACAGCAGTGGACATGTTGGC
TTTATCTTTAAAAGTGGAAAAATCACATCCATAGTAAAAGATAGTTCTGCTGCCAGAAACGGCCTCCTCA
CTGATCACCACATCTGTGAGATCAACGGACAGAACGTCATTGGCTTGAAGGATGCTCAGATTGCAGATAT
ACTGTCAACAGCTGGGACTGTGGTTACCATCACAATCATGCCTACTTTTATCTTCGAACACATTATTAAA
CGGATGGCTCCCAGCATTATGAAAAGCCTGATGGATCACACCATTCCTGAAGTTTAA

Translation (298 aa):
MSLYPSLEDLKVDKVIQAQTAYSANPASQAFVLVDASAALPPDGNLYPKLYPELSQYMGLSLNEAEICES
MPMVSGAPAQGLVARPSSVNYMVAPVTGNDAGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQL
VQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTVTMHKDSSGHVG
FIFKSGKITSIVKDSSAARNGLLTDHHICEINGQNVIGLKDAQIADILSTAGTVVTITIMPTFIFEHIIK
RMAPSIMKSLMDHTIPEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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