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Report for CCDS1455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1455.1 Public Homo sapiens 1 MFSD4A 24 110 108 CCDS HistoryNCBI Gene:148808Re-query CCDS DB by CCDS ID:1455.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1455.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367147.9 ENSP00000356115.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367147.9Link to Ensembl Protein Viewer:ENSP00000356115.4Re-query CCDS DB by Nucleotide ID:ENST00000367147Re-query CCDS DB by Protein ID:ENSP00000356115
Original member Current member NCBI NM_181644.5 NP_857595.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181644.5Link to Protein Sequence:NP_857595.3Re-query CCDS DB by Nucleotide ID:NM_181644Re-query CCDS DB by Protein ID:NP_857595Link to BLAST:NP_857595.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_857595.3 514 Q8N468-1 514 100% 0 0

Chromosomal Locations for CCDS 1455.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 205569070 205569299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205579751 205579949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205580661 205580921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205583955 205584123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205584876 205584991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205586034 205586207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205592140 205592287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205597780 205597850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205599131 205599251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205600406 205600461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGGCTGCGACGGCCGCGTGTCGGGGCTGCTCCGCCGCAACCTGCAGCCCACGCTCACCTACTGGAGCG
TCTTCTTCAGCTTCGGCCTGTGCATCGCCTTCCTGGGGCCCACGCTGCTGGACCTGCGCTGTCAGACGCA
CAGCTCGCTGCCCCAGATCTCCTGGGTCTTCTTCTCGCAGCAGCTCTGCCTCCTGCTGGGCAGCGCCCTC
GGGGGCGTCTTCAAAAGGACCCTGGCCCAGTCACTATGGGCCCTGTTCACCTCCTCTCTGGCCATCTCCC
TGGTGTTTGCCGTCATCCCCTTCTGCCGCGACGTGAAGGTGCTGGCCTCAGTCATGGCGCTGGCGGGCTT
GGCCATGGGCTGCATCGACACCGTGGCCAACATGCAGCTGGTAAGGATGTACCAGAAGGACTCGGCCGTC
TTCCTCCAGGTGCTCCATTTCTTCGTGGGCTTTGGTGCTCTGCTGAGCCCCCTTATTGCTGACCCTTTCC
TGTCTGAGGCCAACTGCTTGCCTGCCAATAGCACGGCCAACACCACCTCCCGAGGCCACCTGTTCCATGT
CTCCAGGGTGCTGGGCCAGCACCACGTAGATGCCAAGCCTTGGTCCAACCAGACGTTCCCAGGGCTGACT
CCAAAGGACGGGGCAGGGACCCGAGTGTCCTATGCCTTCTGGATCATGGCCCTCATCAATCTTCCAGTGC
CCATGGCTGTGCTGATGCTGCTGTCCAAGGAGCGGCTGCTGACCTGCTGTCCCCAGAGGAGGCCCCTGCT
TCTGTCTGCTGATGAGCTTGCCTTGGAGACACAGCCTCCTGAGAAGGAAGATGCCTCCTCACTGCCCCCA
AAGTTTCAGTCACACCTAGGGCATGAGGACCTGTTCAGCTGCTGCCAAAGGAAGAACCTCAGAGGAGCCC
CTTATTCCTTCTTTGCCATCCACATCACGGGCGCCCTGGTACTGTTCATGACGGATGGGTTGACGGGTGC
CTATTCCGCCTTCGTGTACAGCTATGCTGTGGAGAAGCCCCTGTCTGTGGGACACAAGGTGGCTGGCTAC
CTCCCCAGCCTCTTCTGGGGCTTCATCACACTGGGCCGGCTCCTCTCCATTCCCATATCCTCAAGAATGA
AGCCGGCCACCATGGTTTTCATCAACGTGGTTGGCGTGGTGGTGACGTTCCTGGTGCTGCTTATTTTCTC
CTACAACGTCGTCTTCCTGTTCGTGGGGACGGCAAGCCTGGGCCTGTTTCTCAGCAGCACCTTCCCCAGC
ATGCTGGCCTACACGGAGGACTCGCTGCAGTACAAAGGCTGTGCAACCACAGTGCTGGTGACAGGGGCAG
GAGTTGGCGAGATGGTGCTGCAGATGCTGGTTGGTTCGATATTCCAGGCTCAGGGCAGCTATAGTTTCCT
GGTCTGTGGCGTGATCTTTGGTTGTCTGGCTTTTACCTTCTATATCTTGCTCCTGTTTTTCCACAGGATG
CACCCTGGACTCCCATCAGTTCCTACCCAAGACAGATCAATTGGAATGGAAAACTCTGAGTGCTACCAGA
GGTAA

Translation (514 aa):
MGCDGRVSGLLRRNLQPTLTYWSVFFSFGLCIAFLGPTLLDLRCQTHSSLPQISWVFFSQQLCLLLGSAL
GGVFKRTLAQSLWALFTSSLAISLVFAVIPFCRDVKVLASVMALAGLAMGCIDTVANMQLVRMYQKDSAV
FLQVLHFFVGFGALLSPLIADPFLSEANCLPANSTANTTSRGHLFHVSRVLGQHHVDAKPWSNQTFPGLT
PKDGAGTRVSYAFWIMALINLPVPMAVLMLLSKERLLTCCPQRRPLLLSADELALETQPPEKEDASSLPP
KFQSHLGHEDLFSCCQRKNLRGAPYSFFAIHITGALVLFMTDGLTGAYSAFVYSYAVEKPLSVGHKVAGY
LPSLFWGFITLGRLLSIPISSRMKPATMVFINVVGVVVTFLVLLIFSYNVVFLFVGTASLGLFLSSTFPS
MLAYTEDSLQYKGCATTVLVTGAGVGEMVLQMLVGSIFQAQGSYSFLVCGVIFGCLAFTFYILLLFFHRM
HPGLPSVPTQDRSIGMENSECYQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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