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Report for CCDS61325.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61325.1 Public Homo sapiens 13 LRRC63 24 110 108 CCDS HistoryNCBI Gene:220416Re-query CCDS DB by CCDS ID:61325.1Re-query CCDS DB by GeneID:220416See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 61325.1
The exon combination of this CCDS representation is inferred. It is supported by partial human transcript alignments, RNA-seq data from the Illumina Body Map 2.0 project, and by full-length orthologous transcript alignments, e.g., rat BC097406.1 or mouse BC145796.1.

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 61325.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000595396.3 ENSP00000469337.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000595396.3Link to Ensembl Protein Viewer:ENSP00000469337.1Re-query CCDS DB by Nucleotide ID:ENST00000595396Re-query CCDS DB by Protein ID:ENSP00000469337
Original member Current member NCBI NM_001282460.2 NP_001269389.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282460.2Link to Protein Sequence:NP_001269389.1Re-query CCDS DB by Nucleotide ID:NM_001282460Re-query CCDS DB by Protein ID:NP_001269389Link to BLAST:NP_001269389.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269389.1 587 Q05C16 587 100% 0 0

Chromosomal Locations for CCDS 61325.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 46213035 46213119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46227512 46228189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46228665 46228733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46234192 46234349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46246527 46246625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46250355 46250491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46261909 46261992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46266733 46266972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46276590 46276803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1764 nt):
ATGCAAAAGCCCCCACTGCTTCTTCGAAGACCCTTACCTCCAAAATTCACTAAGCTGTCTTTACATGAGA
AAAAAACCCATACAGCTAAAACTGGTAAAATTGAGTCACTACATGTAGCATTCACTGAAGATGAAACCAC
TTCCATTAAAATGGATAGAACTCGTTTTCCTGATGTTTTAAGAAATCAATCACTAACACCTATCAATATC
CAAAATATCTTTCTTGATCACTGTGTACAAGAAAGAGTGACTGCAATTTCATCACCCCAGAAATCTACTA
AGCATGTCCGTGAGCAGATTCCAGATACTGCTACTGGTTCCATATTTTTTCCACATTGTAATTCAGCTTC
TACTCGAATTTTTGGGAAACAAACAAACAAAATGGAAAGTTCAAGAAAGTTTAAAACTATGAAAGATGTT
TATACTGAAAAAAGGCTAGAAAACATTTTAATTCTTTCTTCCAAGTTTTCCAAACCTAAAAGTACTCCTG
GCTCAGTTATCGCTCAAAAACTTGAGAAAATGCACCCTAAGCATCAACCTTTACCAGAGAGTCCAGGCTA
TACTTATCAGCACATCTCGAGAGACTTAAGTGCAACAGTGCCAAGCCCTCCACCTATGACTGTATCTATG
AAACCAGAAGGACAGTGGCCTGAACATTTTAAATCAACTGCTACATTGACACTAAGAGTTACTGAATTTC
CAGGTTTTGTTTCCTTGCCAACACCAGTTTTACCAAGAAAACCTCACAGGCAGTCTGTGATAGAAACTCT
TGTAACAGAAAATGGAAATATAGAAAGTGTCCCAAAGCAAATCCCACCAAGACCACCTGAAGGTCTCACC
AAAACTGAAAAAATAGAATCAGAGATACACGTTGTACGTGGTGAAGGTTTTAAGACTGTTGCAGCAACAC
GATATGAAACAATAACAGCCATGACCAACCTGGCCATAGTAAACTGTCAAGTATATGGGAGAAATGCACT
TAATCTGAAGGGCTTTTTTATCCTAAATTGTCCAGACTTAACACCTTTGGCTTTCCAGTTGATATATCTT
AATTTATCATTTAATGATCTTCATTACTTTCCCACAGAAATATTATGTCTTAAAAATTTACAAATACTGA
AATTGAGAAATAATCCTATCAAAGAAATTCCTTCTGAAATTCAACAACTTGAGTTCCTTAGAATTTTCAC
CATTGCTTTTAATTTAATTACTGTTCTTCCAATTGGGTTATTTTCCTTGTCTTATCTTGAAGAACTTGAT
GTTTCCTATAATGAACTTACTTTTATTCCAAATGAAATTCAGAAACTCAGATCACTTGAAAAACTGACTG
TTGATGGGAATGAACTGAGTTTTTTCCCCCATGGAATTTTGAAGCTTAACCTGACAAAAATTCAGTTTGA
GAATAATTTCACTCATCCTTGTTTTTGGAGAGATAATTATTTGAATAATCCACAACAACTTACTCAAATT
ATTTCTTTGTTCATTGTCCAAAATAAACTACATAAATTTTATGATAAGATCCCAGTAGAAGTTCAGAAGT
TACTAAAATGCACATCCAGGTGTGAATGGTGTCATGGTCCCAAGTTTGGTGAAGGTTTTCGTGTCATCCG
ATCCTGTGATATTTTTGGAGCATCACAGCTTCCAGTTATGTTTTATGTCTGTTCTCCTTCTTGCTATAGA
AGAATAAAGGAAAGCAGTTTTGTTTTAGATGGTAGTCCTAGTAGAAGAATAGCTCTAGATGTGGAGTTGT
CAAAAGAATTATAG

Translation (587 aa):
MQKPPLLLRRPLPPKFTKLSLHEKKTHTAKTGKIESLHVAFTEDETTSIKMDRTRFPDVLRNQSLTPINI
QNIFLDHCVQERVTAISSPQKSTKHVREQIPDTATGSIFFPHCNSASTRIFGKQTNKMESSRKFKTMKDV
YTEKRLENILILSSKFSKPKSTPGSVIAQKLEKMHPKHQPLPESPGYTYQHISRDLSATVPSPPPMTVSM
KPEGQWPEHFKSTATLTLRVTEFPGFVSLPTPVLPRKPHRQSVIETLVTENGNIESVPKQIPPRPPEGLT
KTEKIESEIHVVRGEGFKTVAATRYETITAMTNLAIVNCQVYGRNALNLKGFFILNCPDLTPLAFQLIYL
NLSFNDLHYFPTEILCLKNLQILKLRNNPIKEIPSEIQQLEFLRIFTIAFNLITVLPIGLFSLSYLEELD
VSYNELTFIPNEIQKLRSLEKLTVDGNELSFFPHGILKLNLTKIQFENNFTHPCFWRDNYLNNPQQLTQI
ISLFIVQNKLHKFYDKIPVEVQKLLKCTSRCEWCHGPKFGEGFRVIRSCDIFGASQLPVMFYVCSPSCYR
RIKESSFVLDGSPSRRIALDVELSKEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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