NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37580.1 Public Mus musculus 17 H2-DMb2 23 108 98 CCDS HistoryNCBI Gene:15000Re-query CCDS DB by CCDS ID:37580.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37580.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041982.8 ENSMUSP00000043526.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041982.8Link to Ensembl Protein Viewer:ENSMUSP00000043526.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041982Re-query CCDS DB by Protein ID:ENSMUSP00000043526
Original member Current member NCBI NM_010388.5 NP_034518.1 Accepted alive Link to Nucleotide Sequence:NM_010388.5Link to Protein Sequence:NP_034518.1Re-query CCDS DB by Nucleotide ID:NM_010388Re-query CCDS DB by Protein ID:NP_034518Link to BLAST:NP_034518.1

Chromosomal Locations for CCDS 37580.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34145416 34145470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34147651 34147932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34148551 34148835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34150506 34150622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34150790 34150825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34151085 34151095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGCTGCACTCTGGCTGCTGCTGCTGGTCCTCAGTCTGCACTGTATGGGGGCAGGTGGCTTTGTGGCTC
ATGTGGAAAGCACGTGCGTGCTGAATGATGCTGGGACCCCACAGGACTTCACATACTGTGTTTCCTTCAA
CAAAGATCTGCTGGCCTGCTGGGATCCAGATGTGGGAAAAATAGTCCCCTGTGAATTTGGGGTGCTGTCT
AGATTGGCTGAAATAATTTCAAATATCCTCAACGAACAGGAGAGCCTTATTCATCGCTTGCAAAACGGGC
TTCAGGACTGTGCCACCCACACCCAACCTTTCTGGGATGTGCTGACCCACAGAACGAGAGCGCCATCTGT
CCGAGTAGCCCAAACCACACCTTTTAACACAAGGGAGCCCGTGATGCTGGCCTGCTACGTCTGGGGCTTC
TATCCAGCGGATGTGACCATCACATGGATGAAGAATGGGCAGCTTGTCCCTTCCCACAGCAACAAGGAGA
AGACGGCTCAGCCCAATGGAGACTGGACATACCAGACAGTCTCCTACCTAGCCCTAACCCCTTCCTACGG
GGACGTCTACACCTGCGTGGTTCAGCACAGCGGGACCTCTGAGCCCATCCGCGGGGACTGGACACCTGGG
CTGTCCCCCATCCAGACAGTGAAGGTCTCTGTGTCTGCAGCCACCCTGGGCCTGGGCTTCATCATCTTCT
GTGTTGGCTTCTTCAGATGGCGCAAGTCTCATTCCTCCAGCTACACTCCTCTCCCCGGATCCACCTACCC
AGAAGGACGGCACTAG

Translation (261 aa):
MAALWLLLLVLSLHCMGAGGFVAHVESTCVLNDAGTPQDFTYCVSFNKDLLACWDPDVGKIVPCEFGVLS
RLAEIISNILNEQESLIHRLQNGLQDCATHTQPFWDVLTHRTRAPSVRVAQTTPFNTREPVMLACYVWGF
YPADVTITWMKNGQLVPSHSNKEKTAQPNGDWTYQTVSYLALTPSYGDVYTCVVQHSGTSEPIRGDWTPG
LSPIQTVKVSVSAATLGLGFIIFCVGFFRWRKSHSSSYTPLPGSTYPEGRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH