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Report for CCDS46001.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46001.2 Public Homo sapiens 19 PALM3 24 110 108 CCDS HistoryNCBI Gene:342979Re-query CCDS DB by CCDS ID:46001.2Re-query CCDS DB by GeneID:342979See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 46001.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data or publications.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46001.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000669674.2 ENSP00000499271.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000669674.2Link to Ensembl Protein Viewer:ENSP00000499271.1Re-query CCDS DB by Nucleotide ID:ENST00000669674Re-query CCDS DB by Protein ID:ENSP00000499271
Original member Current member NCBI NM_001145028.2 NP_001138500.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145028.2Link to Protein Sequence:NP_001138500.2Re-query CCDS DB by Nucleotide ID:NM_001145028Re-query CCDS DB by Protein ID:NP_001138500Link to BLAST:NP_001138500.2

Chromosomal Locations for CCDS 46001.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 14053605 14055226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14055380 14055425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14056429 14056513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14056662 14056804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14057351 14057431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14059115 14059163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 14061940 14061980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2067 nt):
ATGGCCCTGCAGAGCCAGGTGTGGTCTCTGGCCACACCCATGCCCATGGCGGAGAGCTCCCTCTACCGGC
AGCGGCTAGAAGTCATCGCTGAGAAGCGGCGGCTGCAGGAGGAGATCCGCGCCGCGCGCCGGGAGGTGGA
GGAGGAGAAACTCCGCGTGGAGCGTCTCAAGAGGAAGTCTCTCCGGGAACGTTGGCTAATGGATGGGGCA
GCTGCAGTGCCAGAGCCATCCGAAGACCCCACCTCGAAGGACCCCCAGTCACCCGAGGGCCAGGCTCAGG
CCCGAATCCGGAACCTGGAAGACAGTTTGTTCACACTCCAGTCCCAGCTGCAACTGTTGCAAAGTGCTTC
CACAGGTGCCCAGCACAAGCCCTCAGGCAGGCCCAGCTGGCGCAGACAGGGTCACCGTCCTCTCTCCCAG
TCCATTGTCGAGGCAGGTTCTGTAGGCCAGACTGATCTGAACAAGAGAGCCTCCCTGCCGGCTGGACTAG
TGGGCACGCCTCCAGAGTCCCCCTCTGAGCCCAGGGAGGATGTCTTGGGGTTTCTGCCAGGCCCGAGGCA
GGTCCCCGGGGCAGCAGGAGACTCCTCAGAAGCCAATGGCCCATGCCCCAGCCCCATCCCCACTCCAGAG
CAGGGGCTAAGTCAGAGGGCAGTGCCATCCGAAGGGCGGGTGGGTGAGGCCAAAGGAGGGGGCGTGGTGA
GTGTGGTGTGGGAAGGGCTGAGGGCCACAGAGGACTGTGCCACAGGGGCCACGGGCCCCGAGCTGGAGGC
TAAGGTGGAGGAAGTGGTGCTGGAAGCCATCGGAGACAGGAAGGGAGCTGGTAGCCTGGAGCTCCCGGCC
TGGGTGAAGGAGGACAGGGGCATCGTGGAGGTGGTCTGGGAGGGGGTGGGTGGCAGTGATGCAGAGGCCA
TGGGGGAGATAGGCAGGGTCCCTGAGGTCGTGCAGACTAGCTCGCCTAGGCTCCAGGAGAGATTAGAGGC
AGCAGCTTCCATAGAAGGGGAAGATGTGCCCCAGGGCAGCCCTGAGGGTGATGGGCAGGGAGGCTCTGGA
GGAGAGGAGGGATCCTTCATTTGGGTGGAGAGAGTGACCCTCAGTGAAGAGTGGGAGGAGCTGCTGGTGG
AGGGGTTGGAAGGGCCCGAGGTGGCAGGGAGGGAGAGAGGAGATGAAAGCCCGCTGGGGGCCGAGGGGGC
CAAGACGGGAGGAGGCGAGGAGACCTGGGAGGCAGAGAAGAGAAAAGCGGAAGAATCCATGGGAATAGGA
AGTGAGGAAAAGCCAGGGACAGGGAGGGATGAAGCGGAGATGTCACCAGTGGTAGAGAGGAAAGGAGGAG
AGAAGAAGTTGGAGCTGGAGAGCAGAGGAAGTGCAGAAAAGCTGGGAACAGAGAGGGAAGGAGGTGAGGA
ACCACTGGGCATAGAGAGAAAAGTTGAGGGACATTTGAGGGCAGAGAAGGAAGGAGATGAGGAAAAGCGA
GGGGCAGAGGAGGAGGAGGTAGAAGAACCATTGGGAGTAGAGAAGAAAGGAGGTGAGGAAGAGCCAGAGG
CAACCAAAGAACCACTGGAGGCAGAGAGAAAGGGAGGGGAGGAGACACTGGAGGCAGAGAAAAGGGGAGG
TGAGGAATCATTGGAGACAGAGAAGACCCAAGGGACGGAGGGAGATCTGAATCTAGAACAAGGGTCTAGG
GAAGGAAGTGAATCCCAGGCAGAGGAGATGAATGAGGCAGGGCCTCCCCTTGAGGCTAACACGGAGACAA
GGCCAGAGAAGGAAGGACCCCAGCCCCAGGAGAAGCCAGTAGGAGCCCTGGAGGAGGAAGGAGTGAAGCC
CCAAACCGCTGCTGAGGGCCAAGGCCCCTTGGGGGATGCCACACCTCTTCTGGCAGAGACCCCAGCCCCA
GAGCAGCCCGCCGAATGCCAGCCACTGCTTCAGGGGGAGGGGCCCAGCGCCAACCCCAGTGCCCACCCTG
TGCCCACCTACGCGCCTGCCCGGCAGCCTGAGCCATCTGCCCCCACCGAGGGTGAAGAGGCAAGTGGCCC
TAAGCAAAAGACGTGCCAGTGTTGTGCGGTCATGTGA

Translation (688 aa):
MALQSQVWSLATPMPMAESSLYRQRLEVIAEKRRLQEEIRAARREVEEEKLRVERLKRKSLRERWLMDGA
AAVPEPSEDPTSKDPQSPEGQAQARIRNLEDSLFTLQSQLQLLQSASTGAQHKPSGRPSWRRQGHRPLSQ
SIVEAGSVGQTDLNKRASLPAGLVGTPPESPSEPREDVLGFLPGPRQVPGAAGDSSEANGPCPSPIPTPE
QGLSQRAVPSEGRVGEAKGGGVVSVVWEGLRATEDCATGATGPELEAKVEEVVLEAIGDRKGAGSLELPA
WVKEDRGIVEVVWEGVGGSDAEAMGEIGRVPEVVQTSSPRLQERLEAAASIEGEDVPQGSPEGDGQGGSG
GEEGSFIWVERVTLSEEWEELLVEGLEGPEVAGRERGDESPLGAEGAKTGGGEETWEAEKRKAEESMGIG
SEEKPGTGRDEAEMSPVVERKGGEKKLELESRGSAEKLGTEREGGEEPLGIERKVEGHLRAEKEGDEEKR
GAEEEEVEEPLGVEKKGGEEEPEATKEPLEAERKGGEETLEAEKRGGEESLETEKTQGTEGDLNLEQGSR
EGSESQAEEMNEAGPPLEANTETRPEKEGPQPQEKPVGALEEEGVKPQTAAEGQGPLGDATPLLAETPAP
EQPAECQPLLQGEGPSANPSAHPVPTYAPARQPEPSAPTEGEEASGPKQKTCQCCAVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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