NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13440.1 Public Homo sapiens 20 ZFP64 24 110 108 CCDS HistoryNCBI Gene:55734Re-query CCDS DB by CCDS ID:13440.1Re-query CCDS DB by GeneID:55734See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13440.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216923.5 ENSP00000216923.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216923.5Link to Ensembl Protein Viewer:ENSP00000216923.4Re-query CCDS DB by Nucleotide ID:ENST00000216923Re-query CCDS DB by Protein ID:ENSP00000216923
Original member Current member NCBI NM_018197.3 NP_060667.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018197.3Link to Protein Sequence:NP_060667.2Re-query CCDS DB by Nucleotide ID:NM_018197Re-query CCDS DB by Protein ID:NP_060667Link to BLAST:NP_060667.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060667.2 681 Q9NTW7-5 681 100% 0 0

Chromosomal Locations for CCDS 13440.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 52152146 52153428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 52160123 52160374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 52164695 52164757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 52165864 52166025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 52186832 52187071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 52191591 52191636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2046 nt):
ATGAACGCGAGCAGCGAGGGCGAGAGCTTCGCGGGCTCGGTGCAAATTCCAGGTGGCACAACGGTGCTGG
TGGAGCTGACTCCCGACATCCATATCTGCGGCATCTGCAAGCAGCAGTTTAACAACCTGGATGCCTTTGT
AGCTCACAAGCAAAGTGGCTGCCAGCTGACAGGCACATCCGCAGCAGCCCCCAGCACGGTCCAGTTTGTA
TCGGAGGAAACAGTGCCTGCCACCCAGACTCAGACCACCACCAGAACCATCACCTCGGAGACCCAGACAA
TCACAGTTTCAGCTCCAGAATTTGTTTTTGAACATGGCTATCAAACTTACCTGCCCACGGAAAGTAATGA
AAACCAGACAGCCACTGTCATCTCTCTCCCTGCCAAGTCACGCACCAAAAAGCCCACAACACCACCTGCT
CAGAAAAGGCTTAACTGTTGCTATCCAGGTTGCCAATTCAAGACTGCTTATGGCATGAAGGACATGGAGC
GGCATTTAAAAATTCACACGGGAGACAAACCCCATAAGTGTGAAGTCTGTGGCAAGTGCTTTAGCCGGAA
AGACAAGCTGAAAACTCACATGCGGTGCCACACGGGCGTGAAGCCCTACAAGTGTAAGACGTGTGACTAC
GCCGCTGCCGACAGCAGCAGCCTCAACAAGCACCTGAGGATCCACTCGGACGAGCGGCCCTTCAAATGCC
AGATCTGCCCCTACGCCAGCCGCAACTCCAGCCAGCTCACTGTCCACCTGCGATCCCACACGGGGGACGC
CCCCTTCCAGTGCTGGCTCTGTAGCGCCAAGTTCAAAATCAGCTCGGACTTGAAAAGGCACATGCGGGTG
CACTCGGGGGAGAAGCCTTTCAAGTGCGAGTTCTGCAATGTCCGCTGCACCATGAAGGGGAACCTCAAGT
CGCACATCCGTATCAAGCACAGCGGGAATAACTTCAAGTGTCCTCATTGCGACTTCCTGGGTGACAGCAA
AGCCACCCTCCGGAAGCACAGCCGCGTGCACCAGTCGGAGCATCCTGAGAAGTGCTCGGAATGCAGCTAC
TCCTGCTCCAGCAAGGCCGCCCTGCGCATCCACGAGCGTATCCACTGCACCGACCGCCCTTTCAAGTGCA
ACTACTGCAGCTTCGACACCAAACAGCCCAGCAACCTGAGCAAGCACATGAAGAAGTTCCATGGGGACAT
GGTTAAGACTGAGGCTCTAGAGAGGAAGGACACCGGCAGGCAGAGCAGCCGGCAGGTGGCCAAGCTGGAT
GCCAAGAAGAGTTTCCACTGCGATATATGCGATGCCTCCTTCATGCGGGAGGACTCGCTCCGCAGCCACA
AGAGACAGCACAGTGAGTACAGTGAGAGTAAGAACTCGGACGTGACCGTTCTCCAGTTTCAGATCGACCC
CAGCAAGCAGCCCGCCACGCCCCTCACTGTGGGACACCTCCAGGTGCCCCTCCAGCCCAGCCAAGTGCCC
CAGTTCAGCGAGGGAAGAGTCAAAATCATCGTTGGGCATCAGGTGCCCCAGGCGAACACCATCGTCCAGG
CTGCCGCCGCTGCAGTGAACATCGTCCCGCCTGCCTTGGTGGCCCAGAACCCAGAGGAACTCCCAGGGAA
CAGCCGGCTGCAGATCCTGCGCCAGGTCAGTCTGATCGCCCCCCCTCAGTCCTCGCGGTGTCCGAGCGAG
GCGGGCGCAATGACCCAGCCGGCTGTCCTGCTGACCACCCACGAGCAGACGGACGGAGCCACTCTGCACC
AGACTCTCATCCCCACGGCCTCAGGTGGCCCCCAGGAAGGCTCTGGCAATCAAACTTTCATTACCAGTTC
GGGTATTACTTGCACTGACTTTGAAGGCCTAAACGCCTTGATTCAGGAGGGGACAGCAGAAGTGACAGTG
GTGAGCGATGGAGGCCAGAACATCGCAGTGGCCACCACAGCGCCACCGGTCTTCTCCTCCTCTTCCCAGC
AAGAACTACCCAAGCAGACCTACTCCATCATTCAAGGGGCAGCCCATCCAGCTTTGCTCTGTCCCGCCGA
CTCCATTCCAGATTAG

Translation (681 aa):
MNASSEGESFAGSVQIPGGTTVLVELTPDIHICGICKQQFNNLDAFVAHKQSGCQLTGTSAAAPSTVQFV
SEETVPATQTQTTTRTITSETQTITVSAPEFVFEHGYQTYLPTESNENQTATVISLPAKSRTKKPTTPPA
QKRLNCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDY
AAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDAPFQCWLCSAKFKISSDLKRHMRV
HSGEKPFKCEFCNVRCTMKGNLKSHIRIKHSGNNFKCPHCDFLGDSKATLRKHSRVHQSEHPEKCSECSY
SCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMVKTEALERKDTGRQSSRQVAKLD
AKKSFHCDICDASFMREDSLRSHKRQHSEYSESKNSDVTVLQFQIDPSKQPATPLTVGHLQVPLQPSQVP
QFSEGRVKIIVGHQVPQANTIVQAAAAAVNIVPPALVAQNPEELPGNSRLQILRQVSLIAPPQSSRCPSE
AGAMTQPAVLLTTHEQTDGATLHQTLIPTASGGPQEGSGNQTFITSSGITCTDFEGLNALIQEGTAEVTV
VSDGGQNIAVATTAPPVFSSSSQQELPKQTYSIIQGAAHPALLCPADSIPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH