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Report for CCDS14064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14064.1 Public Homo sapiens 22 UPK3A 24 110 108 CCDS HistoryNCBI Gene:7380Re-query CCDS DB by CCDS ID:14064.1Re-query CCDS DB by GeneID:7380See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14064.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216211.9 ENSP00000216211.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216211.9Link to Ensembl Protein Viewer:ENSP00000216211.4Re-query CCDS DB by Nucleotide ID:ENST00000216211Re-query CCDS DB by Protein ID:ENSP00000216211
Original member Current member NCBI NM_006953.4 NP_008884.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006953.4Link to Protein Sequence:NP_008884.1Re-query CCDS DB by Nucleotide ID:NM_006953Re-query CCDS DB by Protein ID:NP_008884Link to BLAST:NP_008884.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008884.1 287 O75631-1 287 100% 0 0

Chromosomal Locations for CCDS 14064.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 45285014 45285065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 45285941 45286096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 45287172 45287451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 45289061 45289143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 45293181 45293313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 45295560 45295719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGCCTCCGCTCTGGGCCCTGCTGGCCCTCGGCTGCCTGCGGTTCGGCTCGGCTGTGAACCTGCAGCCCC
AACTGGCCAGTGTGACTTTCGCCACCAACAACCCCACACTTACCACTGTGGCCTTGGAAAAGCCTCTCTG
CATGTTTGACAGCAAAGAGGCCCTCACTGGCACCCACGAGGTCTACCTGTATGTCCTGGTCGACTCAGCC
ATTTCCAGGAATGCCTCAGTGCAAGACAGCACCAACACCCCACTGGGCTCAACGTTCCTACAAACAGAGG
GTGGGAGGACAGGTCCCTACAAAGCTGTGGCCTTTGACCTGATCCCCTGCAGTGACCTGCCCAGCCTGGA
TGCCATTGGGGATGTGTCCAAGGCCTCACAGATCCTGAATGCCTACCTGGTCAGGGTGGGTGCCAACGGG
ACCTGCCTGTGGGATCCCAACTTCCAGGGCCTCTGTAACGCACCCCTGTCGGCAGCCACGGAGTACAGGT
TCAAGTATGTCCTGGTCAATATGTCCACGGGCTTGGTAGAGGACCAGACCCTGTGGTCAGACCCCATCCG
CACCAACCAGCTCACCCCATACTCGACGATCGACACGTGGCCAGGCCGGCGGAGCGGAGGCATGATCGTC
ATCACTTCCATCCTGGGCTCCCTGCCCTTCTTTCTACTTGTGGGTTTTGCTGGCGCCATTGCCCTCAGCC
TCGTGGACATGGGGAGTTCTGATGGGGAAACGACTCACGACTCCCAAATCACTCAGGAGGCTGTTCCCAA
GTCGCTGGGGGCCTCGGAGTCTTCCTACACGTCCGTGAACCGGGGGCCGCCACTGGACAGGGCTGAGGTG
TATTCCAGCAAGCTCCAAGACTGA

Translation (287 aa):
MPPLWALLALGCLRFGSAVNLQPQLASVTFATNNPTLTTVALEKPLCMFDSKEALTGTHEVYLYVLVDSA
ISRNASVQDSTNTPLGSTFLQTEGGRTGPYKAVAFDLIPCSDLPSLDAIGDVSKASQILNAYLVRVGANG
TCLWDPNFQGLCNAPLSAATEYRFKYVLVNMSTGLVEDQTLWSDPIRTNQLTPYSTIDTWPGRRSGGMIV
ITSILGSLPFFLLVGFAGAIALSLVDMGSSDGETTHDSQITQEAVPKSLGASESSYTSVNRGPPLDRAEV
YSSKLQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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