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Report for CCDS6300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6300.1 Public Homo sapiens 8 SLC25A32 24 110 108 CCDS HistoryNCBI Gene:81034Re-query CCDS DB by CCDS ID:6300.1Re-query CCDS DB by GeneID:81034See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6300.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297578.9 ENSP00000297578.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297578.9Link to Ensembl Protein Viewer:ENSP00000297578.4Re-query CCDS DB by Nucleotide ID:ENST00000297578Re-query CCDS DB by Protein ID:ENSP00000297578
Original member Current member NCBI NM_030780.5 NP_110407.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030780.5Link to Protein Sequence:NP_110407.2Re-query CCDS DB by Nucleotide ID:NM_030780Re-query CCDS DB by Protein ID:NP_110407Link to BLAST:NP_110407.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110407.2 315 Q9H2D1 315 100% 0 0

Chromosomal Locations for CCDS 6300.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 103400411 103400546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103401516 103401661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103401941 103402054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103403164 103403324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103404776 103404861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103407634 103407784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103414784 103414937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGACGGGCCAGGGCCAGTCGGCGTCCGGGTCGTCGGCGTGGAGCACGGTATTCCGCCACGTCCGGTATG
AGAACCTGATAGCGGGCGTGAGCGGCGGCGTCTTATCCAACCTTGCGCTGCATCCGCTCGACCTCGTGAA
GATCCGCTTCGCCGTGAGTGATGGATTGGAACTGAGACCGAAATATAATGGAATTTTACATTGCTTGACT
ACCATTTGGAAACTTGATGGACTACGGGGACTTTATCAAGGAGTAACCCCAAATATATGGGGTGCAGGTT
TATCCTGGGGACTCTACTTTTTCTTTTACAATGCCATCAAGTCATATAAAACAGAAGGAAGAGCTGAACG
TTTAGAGGCAACAGAATACCTTGTCTCAGCTGCTGAAGCTGGAGCCATGACCCTCTGCATTACAAACCCA
TTATGGGTAACAAAAACTCGCCTTATGTTACAGTATGATGCTGTTGTTAACTCCCCACACCGACAATATA
AAGGAATGTTTGATACACTTGTGAAAATATATAAGTATGAAGGTGTGCGTGGATTATATAAGGGATTTGT
TCCTGGGCTGTTTGGAACATCGCATGGTGCCCTTCAGTTTATGGCATATGAATTGCTGAAGTTGAAGTAC
AACCAGCATATCAATAGATTACCAGAAGCCCAGTTGAGCACAGTAGAATATATATCTGTTGCAGCACTAT
CCAAAATATTTGCTGTCGCAGCAACATACCCATATCAAGTCGTAAGAGCTCGTCTTCAGGATCAACACAT
GTTTTACAGTGGTGTAATAGATGTAATCACAAAGACATGGAGGAAAGAAGGCGTCGGTGGATTTTACAAG
GGAATTGCTCCTAATTTGATTAGAGTGACTCCAGCCTGCTGTATTACCTTTGTGGTATATGAAAACGTCT
CACATTTTTTACTTGACCTTAGAGAAAAGAGAAAGTAA

Translation (315 aa):
MTGQGQSASGSSAWSTVFRHVRYENLIAGVSGGVLSNLALHPLDLVKIRFAVSDGLELRPKYNGILHCLT
TIWKLDGLRGLYQGVTPNIWGAGLSWGLYFFFYNAIKSYKTEGRAERLEATEYLVSAAEAGAMTLCITNP
LWVTKTRLMLQYDAVVNSPHRQYKGMFDTLVKIYKYEGVRGLYKGFVPGLFGTSHGALQFMAYELLKLKY
NQHINRLPEAQLSTVEYISVAALSKIFAVAATYPYQVVRARLQDQHMFYSGVIDVITKTWRKEGVGGFYK
GIAPNLIRVTPACCITFVVYENVSHFLLDLREKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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