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Report for CCDS46093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46093.1 Public Homo sapiens 19 PSG4 24 110 108 CCDS HistoryNCBI Gene:5672Re-query CCDS DB by CCDS ID:46093.1Re-query CCDS DB by GeneID:5672See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46093.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405312.8 ENSP00000384770.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000405312.8Link to Ensembl Protein Viewer:ENSP00000384770.3Re-query CCDS DB by Nucleotide ID:ENST00000405312Re-query CCDS DB by Protein ID:ENSP00000384770
Original member Current member NCBI NM_002780.5 NP_002771.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002780.5Link to Protein Sequence:NP_002771.2Re-query CCDS DB by Nucleotide ID:NM_002780Re-query CCDS DB by Protein ID:NP_002771Link to BLAST:NP_002771.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002771.2 419 Q00888-1 419 100% 0 0

Chromosomal Locations for CCDS 46093.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43193372 43193388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43194340 43194594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43194995 43195273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43197997 43198275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43203886 43204251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43205473 43205536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGGGCCCCTCTCAGCCCCTCCCTGCACACAGCGCATCACCTGGAAGGGGGTCCTGCTCACAGCATCAC
TTTTAAACTTCTGGAATCCGCCCACAACTGCCCAAGTCACGATTGAAGCCCAGCCACCCAAAGTTTCTGA
GGGGAAGGATGTTCTTCTACTTGTCCACAATTTGCCCCAGAATCTTGCTGGCTACATTTGGTACAAAGGG
CAAATGACATACCTCTACCATTACATTACATCATATGTAGTAGACGGTCAAAGAATTATATATGGGCCTG
CATACAGTGGAAGAGAAAGAGTATATTCCAATGCATCCCTGCTGATCCAGAATGTCACGCAGGAGGATGC
AGGATCCTACACCTTACACATCATAAAGCGACGCGATGGGACTGGAGGAGTAACTGGACATTTCACCTTC
ACCTTACACCTGGAGACTCCCAAGCCCTCCATCTCCAGCAGCAACTTAAATCCCAGGGAGGCCATGGAGG
CTGTGATCTTAACCTGTGATCCTGCGACTCCAGCCGCAAGCTACCAGTGGTGGATGAATGGTCAGAGCCT
CCCTATGACTCACAGGTTGCAGCTGTCCAAAACCAACAGGACCCTCTTTATATTTGGTGTCACAAAGTAT
ATTGCAGGACCCTATGAATGTGAAATACGGAACCCAGTGAGTGCCAGCCGCAGTGACCCAGTCACCCTGA
ATCTCCTCCCAAAGCTGTCCAAGCCCTACATCACAATCAACAACTTAAACCCCAGAGAGAATAAGGATGT
CTTAACCTTCACCTGTGAACCTAAGAGTAAGAACTACACCTACATTTGGTGGCTAAATGGTCAGAGCCTC
CCTGTCAGTCCCAGGGTAAAGCGACCCATTGAAAACAGGATCCTCATTCTACCCAATGTCACGAGAAATG
AAACAGGACCTTATCAATGTGAAATACGGGACCGATATGGTGGCATCCGCAGTGACCCAGTCACCCTGAA
TGTCCTCTATGGTCCAGACCTCCCCAGCATTTACCCTTCATTCACCTATTACCGTTCAGGAGAAAACCTC
TACTTGTCCTGCTTCGCCGAGTCTAACCCACGGGCACAATATTCTTGGACAATTAATGGGAAGTTTCAGC
TATCAGGACAAAAGCTCTCTATCCCCCAAATAACTACAAAGCATAGTGGGCTCTATGCTTGCTCTGTTCG
TAACTCAGCCACTGGCAAGGAAAGCTCCAAATCCATCACAGTCAAAGTCTCTGACTGGATATTACCCTGA

Translation (419 aa):
MGPLSAPPCTQRITWKGVLLTASLLNFWNPPTTAQVTIEAQPPKVSEGKDVLLLVHNLPQNLAGYIWYKG
QMTYLYHYITSYVVDGQRIIYGPAYSGRERVYSNASLLIQNVTQEDAGSYTLHIIKRRDGTGGVTGHFTF
TLHLETPKPSISSSNLNPREAMEAVILTCDPATPAASYQWWMNGQSLPMTHRLQLSKTNRTLFIFGVTKY
IAGPYECEIRNPVSASRSDPVTLNLLPKLSKPYITINNLNPRENKDVLTFTCEPKSKNYTYIWWLNGQSL
PVSPRVKRPIENRILILPNVTRNETGPYQCEIRDRYGGIRSDPVTLNVLYGPDLPSIYPSFTYYRSGENL
YLSCFAESNPRAQYSWTINGKFQLSGQKLSIPQITTKHSGLYACSVRNSATGKESSKSITVKVSDWILP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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