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Report for CCDS5984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5984.1 Public Homo sapiens 8 NEIL2 24 110 108 CCDS HistoryNCBI Gene:252969Re-query CCDS DB by CCDS ID:5984.1Re-query CCDS DB by GeneID:252969See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5984.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000284503.7 ENSP00000284503.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000284503.7Link to Ensembl Protein Viewer:ENSP00000284503.6Re-query CCDS DB by Nucleotide ID:ENST00000284503Re-query CCDS DB by Protein ID:ENSP00000284503
Original member Current member EBI ENST00000436750.7 ENSP00000394023.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436750.7Link to Ensembl Protein Viewer:ENSP00000394023.2Re-query CCDS DB by Nucleotide ID:ENST00000436750Re-query CCDS DB by Protein ID:ENSP00000394023
Original member Current member EBI ENST00000455213.6 ENSP00000397538.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455213.6Link to Ensembl Protein Viewer:ENSP00000397538.2Re-query CCDS DB by Nucleotide ID:ENST00000455213Re-query CCDS DB by Protein ID:ENSP00000397538
Original member Current member NCBI NM_001135746.3 NP_001129218.1 Accepted alive Link to Nucleotide Sequence:NM_001135746.3Link to Protein Sequence:NP_001129218.1Re-query CCDS DB by Nucleotide ID:NM_001135746Re-query CCDS DB by Protein ID:NP_001129218Link to BLAST:NP_001129218.1
Original member Current member NCBI NM_001349442.2 NP_001336371.1 Accepted alive Link to Nucleotide Sequence:NM_001349442.2Link to Protein Sequence:NP_001336371.1Re-query CCDS DB by Nucleotide ID:NM_001349442Re-query CCDS DB by Protein ID:NP_001336371Link to BLAST:NP_001336371.1
Original member Current member NCBI NM_145043.4 NP_659480.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145043.4Link to Protein Sequence:NP_659480.1Re-query CCDS DB by Nucleotide ID:NM_145043Re-query CCDS DB by Protein ID:NP_659480Link to BLAST:NP_659480.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129218.1 332 Q969S2-1 332 100% 0 0
NP_001336371.1 332 Q969S2-1 332 100% 0 0
NP_659480.1 332 Q969S2-1 332 100% 0 0

Chromosomal Locations for CCDS 5984.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 11771448 11771585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11779598 11779950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11783203 11783399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11785963 11786273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGCCAGAAGGGCCGTTGGTGAGGAAATTTCACCATTTGGTCTCCCCCTTTGTGGGTCAGCAGGTGGTCA
AGACAGGGGGCAGCAGTAAGAAGCTACAGCCCGCCAGCCTGCAGTCTCTGTGGCTCCAGGACACCCAGGT
CCATGGAAAGAAATTATTCCTTAGATTTGATCTAGATGAAGAAATGGGGCCCCCTGGCAGCAGCCCAACA
CCAGAGCCTCCACAAAAAGAAGTGCAGAAGGAAGGGGCTGCGGACCCAAAGCAGGTCGGGGAGCCCAGCG
GGCAGAAGACCCTTGATGGATCCTCACGGTCTGCAGAGCTCGTCCCCCAGGGCGAGGATGATTCTGAGTA
TTTGGAGAGAGACGCCCCTGCAGGAGATGCTGGGAGGTGGCTGCGTGTCAGCTTTGGTTTGTTTGGCAGC
GTTTGGGTGAACGATTTCTCCAGAGCCAAGAAAGCCAACAAGAGGGGGGACTGGAGGGACCCTTCCCCGA
GGTTGGTCCTGCACTTTGGTGGTGGTGGCTTCCTGGCATTTTATAATTGTCAGTTGTCTTGGAGCTCTTC
CCCAGTGGTCACACCCACCTGTGACATCCTGTCTGAGAAGTTCCATCGAGGACAAGCCTTAGAAGCTCTA
GGCCAGGCTCAGCCTGTCTGCTATACACTGCTGGACCAGAGATACTTCTCAGGGCTAGGGAACATCATTA
AGAATGAAGCCTTGTACAGAGCTGGGATCCATCCCCTTTCTCTCGGTTCAGTCCTGAGTGCCTCGCGTCG
GGAGGTCCTGGTGGATCACGTGGTGGAGTTCAGTACAGCCTGGCTGCAGGGCAAGTTCCAAGGCAGACCG
CAGCACACACAGGTCTACCAGAAAGAACAGTGCCCTGCTGGCCACCAGGTCATGAAGGAGGCGTTTGGGC
CCGAAGATGGGTTACAGAGGCTCACCTGGTGGTGCCCGCAGTGCCAGCCCCAGTTGTCAGAGGAGCCAGA
GCAGTGCCAGTTCTCCTAA

Translation (332 aa):
MPEGPLVRKFHHLVSPFVGQQVVKTGGSSKKLQPASLQSLWLQDTQVHGKKLFLRFDLDEEMGPPGSSPT
PEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERDAPAGDAGRWLRVSFGLFGS
VWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEAL
GQAQPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRP
QHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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