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Report for CCDS41232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41232.1 Public Homo sapiens 1 RER1 24 110 108 CCDS HistoryNCBI Gene:11079Re-query CCDS DB by CCDS ID:41232.1Re-query CCDS DB by GeneID:11079See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41232.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000488353.2 ENSP00000464222.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000488353.2Link to Ensembl Protein Viewer:ENSP00000464222.1Re-query CCDS DB by Nucleotide ID:ENST00000488353Re-query CCDS DB by Protein ID:ENSP00000464222
Original member Current member EBI ENST00000605895.6 ENSP00000475168.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000605895.6Link to Ensembl Protein Viewer:ENSP00000475168.1Re-query CCDS DB by Nucleotide ID:ENST00000605895Re-query CCDS DB by Protein ID:ENSP00000475168
Original member Current member NCBI NM_007033.5 NP_008964.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007033.5Link to Protein Sequence:NP_008964.3Re-query CCDS DB by Nucleotide ID:NM_007033Re-query CCDS DB by Protein ID:NP_008964Link to BLAST:NP_008964.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008964.3 196 O15258 196 100% 0 0

Chromosomal Locations for CCDS 41232.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 2395791 2395871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2397116 2397220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2399415 2399514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2400857 2400935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2402207 2402342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2403035 2403124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGTCTGAAGGGGACAGTGTGGGAGAATCCGTCCATGGGAAACCTTCGGTGGTGTACAGATTTTTCACAA
GA
CTTGGACAGATTTATCAGTCCTGGCTAGACAAGTCCACACCCTACACGGCTGTGCGATGGGTCGTGAC
A
CTGGGCCTGAGCTTTGTCTACATGATTCGAGTTTACCTGCTGCAGGGTTGGTACATTGTGACCTATGCC
TTG
GGGATCTACCATCTAAATCTTTTCATAGCTTTTCTTTCTCCCAAAGTGGATCCTTCCTTAATGGAAG
AC
TCAGATGACGGTCCTTCGCTACCCACCAAACAGAACGAGGAATTCCGCCCCTTCATTCGAAGGCTCCC
A
GAGTTTAAATTTTGGCATGCGGCTACCAAGGGCATCCTTGTGGCTATGGTCTGTACTTTCTTCGACGCT
TTC
AACGTCCCGGTGTTCTGGCCGATTCTGGTGATGTACTTCATCATGCTCTTCTGTATCACGATGAAGA
GG
CAAATCAAGCACATGATTAAGTACCGGTACATCCCGTTCACACATGGGAAGAGAAGGTACAGAGGCAA
G
GAGGATGCCGGCAAGGCCTTCGCCAGCTAG


Translation (196 aa):
MSEGDSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYA
L
GIYHLNLFIAFLSPKVDPSLMEDS
DDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDA
F
NVPVFWPILVMYFIMLFCITMKRQIK
HMIKYRYIPFTHGKRRYRGKEDAGKAFAS



Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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