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Report for CCDS47919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47919.1 Public Homo sapiens 8 OC90 24 110 108 CCDS HistoryNCBI Gene:729330Re-query CCDS DB by CCDS ID:47919.1Re-query CCDS DB by GeneID:729330See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47919.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254627.4 ENSP00000254627.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254627.4Link to Ensembl Protein Viewer:ENSP00000254627.3Re-query CCDS DB by Nucleotide ID:ENST00000254627Re-query CCDS DB by Protein ID:ENSP00000254627
Original member Current member NCBI NM_001080399.3 NP_001073868.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080399.3Link to Protein Sequence:NP_001073868.2Re-query CCDS DB by Nucleotide ID:NM_001080399Re-query CCDS DB by Protein ID:NP_001073868Link to BLAST:NP_001073868.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073868.2 477 Q02509-1 477 100% 0 0

Chromosomal Locations for CCDS 47919.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 132024481 132024776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132029073 132029179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132031881 132032052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132033039 132033164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132034781 132034834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132037438 132037488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132038790 132038831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132038995 132039123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132041044 132041156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132041525 132041699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132044433 132044489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132045818 132045883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 132054981 132055026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGATTGCGTTTCTCCTCACCAGTGTGCTGATGATCCCCCATGCCGGAGGCCATCCTCTGGACACTCCAC
ATCTTCCACAGGAGCTGCCTCCAGGACTCCCAAACAATATCAATATCACTTTCTTCAGTGGGATGTTTAA
AAATGTGGAAAGTGTGGCTGAAATTTTTGATTGCCTGGGCCCCCACTTCACCTGGCTGCAGGCTGTCTTC
ACCAATTTCCCTGTGCTGATCCAGTTTGTCAATGGTATGAAGTGTGTGGCTGGTCTCTGCCCCCGAGACT
TTGAAGACTATGGTTGCACCTGCAGGTTTGAGATGGAAGGGTTGCCTGTGGATGAATCTGACAGCTGCTG
CTTCCAGCACCGCAGGTGCTATGAGGAGGCCGCTGAGATGGACTGTCTCCAAGACCCCGCCAAACTTAGC
ACAGAGGTCAATTGTGTCAGCAAGAAGATCATATGTGAGTCCAAGGACAACTGTGAGCACCTGCTGTGTA
CCTGTGATAAGGCTGCCATAGAGTGCTTGGCTCGATCCAGCCTCAACTCTTCCCTGAACCTTCTGGACAC
CTCCTTCTGCCTGGCTCAGACTCCAGAGACAACCATCAAGGAAGACTTGACAACACTTCTGCCCAGAGTG
GTTCCTGTGGAGCCCACAGACACCAGCCTGACAGCCCTTTCAGGAGAAGAAGCAGGCCACGATCAGGAAG
GAGTGGGAGCTGCTAGGGCTACGTCCCCTCCAGGATCTGCAGAGATAGTTGCAACAAGGGTTACAGCTAA
AATTGTAACCCTTGTCCCTGCTGGCATTAAATCTCTGGGGCTGGCAGTGTCATCTGTTGAAAATGATCCT
GAGGAGACCACTGAAAAAGCCTGTGACAGATTCACCTTCCTGCACCTGGGAAGTGGGGACAACATGCAGG
TGATGCCACAGCTTGGAGAGATGCTCTTTTGTCTGACATCCCGGTGCCCGGAGGAATTTGAGTCTTATGG
CTGTTACTGTGGACAAGAAGGAAGAGGCGAGCCAAGGGATGACCTAGACAGGTGCTGCTTGTCCCATCAC
TGCTGCCTAGAGCAAGTGAGAAGGCTGGGCTGCCTGCTTGAGAGGCTTCCTTGGTCACCGGTGGTGTGTG
TGGATCATACGCCCAAGTGTGGGGGCCAAAGCCTGTGTGAGAAGTTGCTCTGTGCCTGTGACCAGACGGC
AGCTGAGTGCATGACCTCTGCCTCCTTTAACCAAAGCCTCAAGTCCCCAAGCAGACTCGGGTGCCCTGGG
CAGCCAGCAGCCTGTGAAGACAGCCTGCACCCTGTGCCCGCAGCCCCCACCCTGGGCTCCAGCTCTGAGG
AGGACAGCGAGGAGGACCCTCCACAGGAGGACCTCGGCAGAGCCAAGAGGTTTCTGCGGAAGTCACTGGG
TCCCTTGGGGATCGGGCCTCTTCATGGAAGATAG

Translation (477 aa):
MIAFLLTSVLMIPHAGGHPLDTPHLPQELPPGLPNNINITFFSGMFKNVESVAEIFDCLGPHFTWLQAVF
TNFPVLIQFVNGMKCVAGLCPRDFEDYGCTCRFEMEGLPVDESDSCCFQHRRCYEEAAEMDCLQDPAKLS
TEVNCVSKKIICESKDNCEHLLCTCDKAAIECLARSSLNSSLNLLDTSFCLAQTPETTIKEDLTTLLPRV
VPVEPTDTSLTALSGEEAGHDQEGVGAARATSPPGSAEIVATRVTAKIVTLVPAGIKSLGLAVSSVENDP
EETTEKACDRFTFLHLGSGDNMQVMPQLGEMLFCLTSRCPEEFESYGCYCGQEGRGEPRDDLDRCCLSHH
CCLEQVRRLGCLLERLPWSPVVCVDHTPKCGGQSLCEKLLCACDQTAAECMTSASFNQSLKSPSRLGCPG
QPAACEDSLHPVPAAPTLGSSSEEDSEEDPPQEDLGRAKRFLRKSLGPLGIGPLHGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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