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Report for CCDS72873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72873.1 Public Homo sapiens 1 LIX1L 24 110 108 CCDS HistoryNCBI Gene:128077Re-query CCDS DB by CCDS ID:72873.1Re-query CCDS DB by GeneID:128077See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72873.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000604000.4 ENSP00000474487.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000604000.4Link to Ensembl Protein Viewer:ENSP00000474487.3Re-query CCDS DB by Nucleotide ID:ENST00000604000Re-query CCDS DB by Protein ID:ENSP00000474487
Original member Current member NCBI NM_153713.3 NP_714924.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153713.3Link to Protein Sequence:NP_714924.1Re-query CCDS DB by Nucleotide ID:NM_153713Re-query CCDS DB by Protein ID:NP_714924Link to BLAST:NP_714924.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_714924.1 337 Q8IVB5 337 100% 0 0

Chromosomal Locations for CCDS 72873.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 145936310 145936552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145936908 145936985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145937604 145937699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145942713 145942853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145947619 145947782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145957636 145957927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGAGACTATGCGAGCGCAGCGGCTGCAGCCTGGTGTGGGCACCAGCGGGAGGGGCACTCTCCGAGCGC
TG
CGGCCCGGAGTGACTGGGGCCGCGGCCGCCACCGCCACACCCCCTGCGGGCCCCCCGCCTGCCCCGCC
G
CCTCCCGCACCGCCCCCGCCGCCGCTGCTCCTGTCTGGGGCCCCAGGACTACCCCTGCCCCCCGGCGCC
GCC
GGCAGCCCGGCAGTGCTGCGAGAGGCCGTGGAGGCCGTGGTGAGGAGCTTCGCCAAGCACACGCAGG
GC
TATGGCCGAGTGAATGTGGTGGAGGCACTTCAGGAATTCTGGCAGATGAAGCAGTCCCGTGGTGCTGA
C
TTAAAGAATGGGGCTCTAGTGGTTTATGAGATGGTTCCCTCCAACAGCCCTCCTTATGTCTGCTATGTC
ACC
CTGCCTGGGGGAAGCTGCTTTGGGAGTTTCCAGTTTTGCCCCACAAAAGCTGAGGCCCGGAGGAGTG
CT
GCAAAGATTGCGCTAATGAATTCTGTGTTTAATGAACATCCTTCCCGAAGAATCACTGATGAGTTCAT
C
GAGAAGAGTGTCTCTGAGGCCCTGGCATCTTTTAATGGCAACAGGGAGGAAGCTGACAACCCAAATACA
GGG
ATTGGTGCCTTCCGATTCATGCTGGAATCCAACAAGGGCAAATCAATGTTGGAGTTCCAGGAGCTAA
TG
ACAGTTTTTCAACTGCTACACTGGAATGGCAGCCTTAAGGCCATGAGGGAACGACAATGCTCTCGGCA
G
GAGGTGTTGGCTCATTATTCGCACCGGGCCCTGGATGATGATATTCGCCACCAAATGGCCTTGGACTGG
GTG
AGCCGGGAGCAGAGTGTGCCGGGGGCACTGTCTAGAGAGCTGGCCTCTACTGAGCGGGAGCTGGATG
AA
GCCCGACTGGCAGGCAAGGAGCTGCGCTTCCACAAGGAGAAGAAAGATATTCTTGTGCTGGCTGCTGG
G
CAGTTGGGCAATATGCATTCTTCCAACTGCTAG


Translation (337 aa):
METMRAQRLQPGVGTSGRGTLRALRPGVTGAAAATATPPAGPPPAPPPPAPPPPPLLLSGAPGLPLPPGA
A
GSPAVLREAVEAVVRSFAKHTQGYGR
VNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYV
T
LPGGSCFGSFQ
FCPTKAEARRSAAKIALMNSVFNEHPSRRITDEFIEKSVSEALASFNGNREEADNPNT
G
IGAFRFMLESNKGKSMLEFQ
ELMTVFQLLHWNGSLKAMRERQCSRQEVLAHYSHRALDDDIRHQMALDW
V
SREQSVPGALSRELASTERELDEARLAGKELRFHKEKKDILVLAAGQLGNMHSSNC




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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