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Report for CCDS8398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8398.1 Public Homo sapiens 11 TMEM25 24 110 108 CCDS HistoryNCBI Gene:84866Re-query CCDS DB by CCDS ID:8398.1Re-query CCDS DB by GeneID:84866See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8398.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313236.10 ENSP00000315635.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000313236.10Link to Ensembl Protein Viewer:ENSP00000315635.5Re-query CCDS DB by Nucleotide ID:ENST00000313236Re-query CCDS DB by Protein ID:ENSP00000315635
Original member Current member NCBI NM_032780.4 NP_116169.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032780.4Link to Protein Sequence:NP_116169.2Re-query CCDS DB by Nucleotide ID:NM_032780Re-query CCDS DB by Protein ID:NP_116169Link to BLAST:NP_116169.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116169.2 366 Q86YD3-1 366 100% 0 0

Chromosomal Locations for CCDS 8398.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118531802 118531871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118532150 118532461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118532917 118533207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118533420 118533551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118533857 118533887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118534029 118534129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118534266 118534355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118534507 118534580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGCGCTGCCTCCAGGCCCAGCCGCCCTCCGGCACACACTGCTGCTCCTGCCAGCCCTTCTGAGCTCAG
GTTGGGGGGAGTTGGAGCCACAAATAGATGGTCAGACCTGGGCTGAGCGGGCACTTCGGGAGAATGAACG
CCACGCCTTCACCTGCCGGGTGGCAGGGGGGCCTGGCACCCCCAGATTGGCCTGGTATCTGGATGGACAG
CTGCAGGAGGCCAGCACCTCAAGACTGCTGAGCGTGGGAGGGGAGGCCTTCTCTGGAGGCACCAGCACCT
TCACTGTCACTGCCCATCGGGCCCAGCATGAGCTCAACTGCTCTCTGCAGGACCCCAGAAGTGGCCGATC
AGCCAACGCCTCTGTCATCCTTAATGTGCAATTCAAGCCAGAGATTGCCCAAGTCGGCGCCAAGTACCAG
GAAGCTCAGGGCCCAGGCCTCCTGGTTGTCCTGTTTGCCCTGGTGCGTGCCAACCCGCCGGCCAATGTCA
CCTGGATCGACCAGGATGGGCCAGTGACTGTCAACACCTCTGACTTCCTGGTGCTGGATGCGCAGAACTA
CCCCTGGCTCACCAACCACACGGTGCAGCTGCAGCTCCGCAGCCTGGCACACAACCTCTCGGTGGTGGCC
ACCAATGACGTGGGTGTCACCAGTGCGTCGCTTCCAGCCCCAGGGCTTCTGGCTACCCGGGTGGAAGTGC
CACTGCTGGGCATTGTTGTGGCTGCTGGGCTTGCACTGGGCACCCTCGTGGGGTTCAGCACCTTGGTGGC
CTGCCTGGTCTGCAGAAAAGAGAAGAAAACCAAAGGCCCCTCCCGGCACCCATCTCTGATATCAAGTGAC
TCCAACAACCTAAAACTCAACAACGTGCGCCTGCCACGGGAGAACATGTCCCTCCCGTCCAACCTTCAGC
TCAATGACCTCACTCCAGATTCCAGAGCAGTGAAACCAGCAGACCGGCAGATGGCTCAGAACAACAGCCG
GCCAGAGCTTCTGGACCCGGAGCCCGGCGGCCTCCTCACCAGCCAAGGTTTCATCCGCCTCCCAGTGCTG
GGCTATATCTATCGAGTGTCCAGCGTGAGCAGTGATGAGATCTGGCTCTGA

Translation (366 aa):
MALPPGPAALRHTLLLLPALLSSGWGELEPQIDGQTWAERALRENERHAFTCRVAGGPGTPRLAWYLDGQ
LQEASTSRLLSVGGEAFSGGTSTFTVTAHRAQHELNCSLQDPRSGRSANASVILNVQFKPEIAQVGAKYQ
EAQGPGLLVVLFALVRANPPANVTWIDQDGPVTVNTSDFLVLDAQNYPWLTNHTVQLQLRSLAHNLSVVA
TNDVGVTSASLPAPGLLATRVEVPLLGIVVAAGLALGTLVGFSTLVACLVCRKEKKTKGPSRHPSLISSD
SNNLKLNNVRLPRENMSLPSNLQLNDLTPDSRAVKPADRQMAQNNSRPELLDPEPGGLLTSQGFIRLPVL
GYIYRVSSVSSDEIWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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