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Report for CCDS11059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11059.1 Public Homo sapiens 17 SLC25A11 24 110 108 CCDS HistoryNCBI Gene:8402Re-query CCDS DB by CCDS ID:11059.1Re-query CCDS DB by GeneID:8402See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11059.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000225665.12 ENSP00000225665.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000225665.12Link to Ensembl Protein Viewer:ENSP00000225665.7Re-query CCDS DB by Nucleotide ID:ENST00000225665Re-query CCDS DB by Protein ID:ENSP00000225665
Original member Current member NCBI NM_003562.5 NP_003553.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003562.5Link to Protein Sequence:NP_003553.2Re-query CCDS DB by Nucleotide ID:NM_003562Re-query CCDS DB by Protein ID:NP_003553Link to BLAST:NP_003553.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003553.2 314 Q02978-1 314 100% 0 0

Chromosomal Locations for CCDS 11059.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 4937741 4937896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4938023 4938074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4938154 4938253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4938339 4938429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4938512 4938602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4938769 4938975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4939060 4939212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4939816 4939910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGCGGCGACGGCGAGTGCCGGGGCCGGCGGGATAGACGGGAAGCCCCGTACCTCCCCTAAGTCCGTCA
AGTTCCTGTTTGGGGGCCTGGCCGGGATGGGAGCTACAGTTTTTGTCCAGCCCCTGGACCTGGTGAAGAA
CCGGATGCAGTTGAGCGGGGAAGGGGCCAAGACTCGAGAGTACAAAACCAGCTTCCATGCCCTCACCAGT
ATCCTGAAGGCAGAAGGCCTGAGGGGCATTTACACTGGGCTGTCGGCTGGCCTGCTGCGTCAGGCCACCT
ACACCACTACCCGCCTTGGCATCTATACCGTGCTGTTTGAGCGCCTGACTGGGGCTGATGGTACTCCCCC
TGGCTTTCTGCTGAAGGCTGTGATTGGCATGACCGCAGGTGCCACTGGTGCCTTTGTGGGAACACCAGCC
GAAGTGGCTCTTATCCGCATGACTGCCGATGGCCGGCTTCCAGCTGACCAGCGCCGTGGCTACAAAAATG
TGTTTAACGCCCTGATTCGAATCACCCGGGAAGAGGGTGTCCTCACACTGTGGCGGGGCTGCATCCCTAC
CATGGCTCGGGCCGTCGTCGTCAATGCTGCCCAGCTCGCCTCCTACTCCCAATCCAAGCAGTTCTTACTG
GACTCAGGCTACTTCTCTGACAACATCTTGTGCCACTTCTGTGCCAGCATGATCAGCGGTCTTGTCACCA
CTGCTGCCTCCATGCCTGTGGACATTGCCAAGACCCGAATCCAGAACATGCGGATGATTGATGGGAAGCC
GGAATACAAGAACGGGCTGGACGTGCTGTTCAAAGTTGTCCGCTACGAGGGCTTCTTCAGCCTGTGGAAG
GGCTTCACGCCGTACTATGCCCGCCTGGGCCCCCACACCGTCCTCACCTTCATCTTCTTGGAGCAGATGA
ACAAGGCCTACAAGCGTCTCTTCCTCAGTGGCTGA

Translation (314 aa):
MAATASAGAGGIDGKPRTSPKSVKFLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTSFHALTS
ILKAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPA
EVALIRMTADGRLPADQRRGYKNVFNALIRITREEGVLTLWRGCIPTMARAVVVNAAQLASYSQSKQFLL
DSGYFSDNILCHFCASMISGLVTTAASMPVDIAKTRIQNMRMIDGKPEYKNGLDVLFKVVRYEGFFSLWK
GFTPYYARLGPHTVLTFIFLEQMNKAYKRLFLSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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