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Report for CCDS3133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3133.1 Public Homo sapiens 3 PLSCR4 24 110 108 CCDS HistoryNCBI Gene:57088Re-query CCDS DB by CCDS ID:3133.1Re-query CCDS DB by GeneID:57088See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3133.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354952.7 ENSP00000347038.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354952.7Link to Ensembl Protein Viewer:ENSP00000347038.2Re-query CCDS DB by Nucleotide ID:ENST00000354952Re-query CCDS DB by Protein ID:ENSP00000347038
Original member Current member EBI ENST00000446574.6 ENSP00000399315.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446574.6Link to Ensembl Protein Viewer:ENSP00000399315.2Re-query CCDS DB by Nucleotide ID:ENST00000446574Re-query CCDS DB by Protein ID:ENSP00000399315
Original member Current member EBI ENST00000493382.5 ENSP00000419040.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000493382.5Link to Ensembl Protein Viewer:ENSP00000419040.1Re-query CCDS DB by Nucleotide ID:ENST00000493382Re-query CCDS DB by Protein ID:ENSP00000419040
Original member Current member NCBI NM_020353.3 NP_065086.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020353.3Link to Protein Sequence:NP_065086.2Re-query CCDS DB by Nucleotide ID:NM_020353Re-query CCDS DB by Protein ID:NP_065086Link to BLAST:NP_065086.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065086.2 329 Q9NRQ2-1 329 100% 0 0

Chromosomal Locations for CCDS 3133.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 146194411 146194455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146195124 146195282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146196632 146196793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146199813 146200039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146201035 146201077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146206526 146206761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146220815 146220925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146222065 146222071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGTCAGGTGTGGTACCCACAGCCCCTGAACAGCCTGCAGGTGAAATGGAAAATCAAACAAAACCACCAG
ATCCAAGGCCTGATGCTCCTCCTGAATACAATTCTCATTTTTTACCAGGACCCCCTGGAACAGCTGTCCC
TCCACCTACTGGCTACCCAGGAGGCTTGCCTATGGGATACTACAGTCCACAGCAACCCAGTACCTTCCCT
TTGTACCAGCCAGTTGGTGGTATCCATCCTGTCCGGTATCAGCCTGGCAAATATCCTATGCCAAATCAGT
CTGTTCCAATAACATGGATGCCAGGGCCAACTCCTATGGCAAACTGCCCTCCTGGTCTGGAATACTTAGT
TCAGTTGGACAACATACATGTTCTTCAGCATTTTGAGCCTCTGGAAATGATGACATGTTTTGAAACTAAT
AATAGATATGATATTAAAAACAACTCAGACCAGATGGTTTACATTGTAACCGAAGACACAGATGACTTTA
CCAGGAATGCCTATCGGACACTAAGGCCCTTCGTCCTCCGGGTCACTGATTGTATGGGCCGAGAAATCAT
GACAATGCAGAGACCCTTCAGATGCACCTGCTGTTGCTTCTGTTGCCCCTCTGCCAGACAAGAGCTGGAG
GTGCAGTGTCCTCCTGGTGTCACCATTGGCTTTGTTGCGGAACATTGGAACCTGTGCAGGGCGGTGTACA
GCATCCAAAATGAGAAGAAAGAAAATGTGATGAGAGTTCGTGGGCCATGCTCAACCTATGGCTGTGGTTC
AGATTCTGTTTTTGAGGTCAAATCCCTTGATGGCATATCCAACATCGGCAGTATTATCCGGAAGTGGAAT
GGTTTGTTATCAGCAATGGCAGATGCTGACCATTTTGACATTCACTTCCCACTAGACCTGGATGTGAAGA
TGAAAGCCATGATTTTTGGAGCTTGCTTCCTCATTGACTTCATGTATTTTGAAAGATCTCCACCACAACG
TTCAAGATAG

Translation (329 aa):
MSGVVPTAPEQPAGEMENQTKPPDPRPDAPPEYNSHFLPGPPGTAVPPPTGYPGGLPMGYYSPQQPSTFP
LYQPVGGIHPVRYQPGKYPMPNQSVPITWMPGPTPMANCPPGLEYLVQLDNIHVLQHFEPLEMMTCFETN
NRYDIKNNSDQMVYIVTEDTDDFTRNAYRTLRPFVLRVTDCMGREIMTMQRPFRCTCCCFCCPSARQELE
VQCPPGVTIGFVAEHWNLCRAVYSIQNEKKENVMRVRGPCSTYGCGSDSVFEVKSLDGISNIGSIIRKWN
GLLSAMADADHFDIHFPLDLDVKMKAMIFGACFLIDFMYFERSPPQRSR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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