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Report for CCDS46254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46254.1 Public Homo sapiens 2 CAPN14 24 110 108 CCDS HistoryNCBI Gene:440854Re-query CCDS DB by CCDS ID:46254.1Re-query CCDS DB by GeneID:440854See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46254.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403897.4 ENSP00000385247.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000403897.4Link to Ensembl Protein Viewer:ENSP00000385247.3Re-query CCDS DB by Nucleotide ID:ENST00000403897Re-query CCDS DB by Protein ID:ENSP00000385247
Original member Current member NCBI NM_001145122.2 NP_001138594.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145122.2Link to Protein Sequence:NP_001138594.1Re-query CCDS DB by Nucleotide ID:NM_001145122Re-query CCDS DB by Protein ID:NP_001138594Link to BLAST:NP_001138594.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138594.1 684 A8MX76-1 684 100% 0 0

Chromosomal Locations for CCDS 46254.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 31174681 31174707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31176587 31176642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31177026 31177142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31177746 31177821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31178511 31178579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31180936 31181000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31186428 31186485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31187758 31187814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31188318 31188354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31189273 31189478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31191399 31191407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31191935 31192098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31193131 31193294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31194409 31194483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31197249 31197334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31199470 31199532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31200451 31200625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31201862 31201998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31202134 31202252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31203070 31203139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31205223 31205447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGTCTCTGTGGCCACCTTTCCGATGCAGATGGAAGCTGGCGCCAAGGTACTCTAGGAGGGCGTCTCCAC
AGCAACCCCAACAGGACTTTGAGGCCCTGCTGGCAGAGTGCCTGAGGAATGGCTGCCTCTTTGAAGACAC
CAGCTTCCCGGCCACCCTGAGCTCCATCGGCAGTGGCTCCCTGCTGCAGAAGCTGCCACCCCGCCTGCAG
TGGAAGAGGCCCCCGGAGCTGCACAGCAATCCCCAGTTTTATTTTGCCAAGGCCAAAAGGCTGGATCTGT
GCCAGGGGATAGTAGGAGACTGCTGGTTCTTGGCTGCTTTGCAAGCTCTGGCCTTGCACCAGGACATCCT
GAGCCGGGTTGTTCCCCTGAATCAGAGTTTCACTGAGAAGTATGCTGGCATCTTCCGGTTCTGGTTCTGG
CACTATGGGAACTGGGTTCCTGTGGTGATCGATGACCGTCTGCCTGTGAATGAGGCTGGCCAGCTGGTCT
TTGTCTCCTCCACCTATAAGAACTTGTTCTGGGGAGCACTTCTGGAAAAGGCCTATGCCAAGCTCTCTGG
TTCCTATGAAGACTTGCAGTCAGGACAGGTGTCTGAAGCCCTTGTAGACTTCACTGGAGGGGTGACAATG
ACCATCAACCTGGCAGAAGCCCATGGCAACCTCTGGGACATCCTCATCGAAGCCACCTACAACAGAACCC
TCATTGGCTGCCAGACCCACTCAGGGGAGAAGATTCTGGAGAATGGGCTGGTGGAAGGCCATGCCTATAC
TCTCACAGGAATCAGGAAGGTGACCTGCAAACATAGACCTGAATATCTCGTCAAGCTACGGAACCCCTGG
GGAAAGGTGGAATGGAAAGGAGACTGGAGTGACAGTTCAAGTAAATGGGAGCTGCTGAGCCCCAAGGAGA
AGATTCTGCTTCTGAGGAAAGACAATGACGGAGAATTCTGGATGACGCTGCAGGACTTTAAAACACATTT
CGTGCTCCTGGTTATCTGTAAACTGACCCCAGGCCTGTTGAGCCAGGAGGCGGCCCAGAAGTGGACGTAC
ACCATGCGGGAGGGGAGATGGGAGAAGCGGAGCACAGCTGGTGGCCAGAGGCAGTTGCTGCAGGACACAT
TTTGGAAGAACCCGCAGTTCCTGCTGTCTGTCTGGAGGCCCGAGGAGGGCAGGAGATCCCTGAGGCCCTG
CAGCGTGCTGGTGTCCCTGCTCCAGAAGCCCAGGCACAGGTGCCGCAAGCGGAAGCCTCTCCTCGCCATT
GGCTTCTACCTGTATAGGATGAACAAGTACCATGATGACCAGAGGAGACTGCCCCCTGAGTTCTTCCAGA
GAAACACTCCTCTGAGCCAGCCTGATAGGTTTCTCAAGGAGAAAGAAGTGAGTCAGGAGCTGTGTCTGGA
ACCAGGGACGTACCTCATCGTGCCCTGCATATTGGAGGCCCACCAGAAGTCAGAGTTCGTCCTCAGGGTC
TTCTCCAGGAAGCACATCTTTTATGAAATTGGCAGCAATTCTGGTGTCGTCTTCTCAAAGGAGATAGAAG
ACCAAAATGAAAGGCAGGATGAATTCTTCACCAAATTCTTTGAAAAGCATCCAGAGATTAATGCAGTTCA
ACTTCAGAACCTCCTGAACCAGATGACCTGGTCAAGTCTGGGGAGCAGACAGCCCTTCTTTAGCCTGGAA
GCCTGCCAGGGGATCCTGGCCTTACTGGACCTTAATGCATCAGGTACTATGAGCATCCAGGAATTCAGGG
ACCTGTGGAAGCAGCTGAAGCTCTCTCAGAAGGTTTTCCACAAGCAAGACCGTGGGTCAGGATACCTGAA
CTGGGAGCAGCTGCACGCTGCCATGAGGGAGGCAGGAATCATGCTCAGTGATGACGTCTGTCAGCTGATG
CTCATCCGCTACGGCGGCCCCCGCCTCCAGATGGACTTTGTCAGTTTCATCCACTTGATGCTGCGTGTAG
AGAACATGGAGGATGTCTTCCAAAACTTAACCCAAGATGGCAAAGGGATATACCTCCAGAAGCCAGAGTG
GATGATGATGGCACTGTACTCCTGA

Translation (684 aa):
MSLWPPFRCRWKLAPRYSRRASPQQPQQDFEALLAECLRNGCLFEDTSFPATLSSIGSGSLLQKLPPRLQ
WKRPPELHSNPQFYFAKAKRLDLCQGIVGDCWFLAALQALALHQDILSRVVPLNQSFTEKYAGIFRFWFW
HYGNWVPVVIDDRLPVNEAGQLVFVSSTYKNLFWGALLEKAYAKLSGSYEDLQSGQVSEALVDFTGGVTM
TINLAEAHGNLWDILIEATYNRTLIGCQTHSGEKILENGLVEGHAYTLTGIRKVTCKHRPEYLVKLRNPW
GKVEWKGDWSDSSSKWELLSPKEKILLLRKDNDGEFWMTLQDFKTHFVLLVICKLTPGLLSQEAAQKWTY
TMREGRWEKRSTAGGQRQLLQDTFWKNPQFLLSVWRPEEGRRSLRPCSVLVSLLQKPRHRCRKRKPLLAI
GFYLYRMNKYHDDQRRLPPEFFQRNTPLSQPDRFLKEKEVSQELCLEPGTYLIVPCILEAHQKSEFVLRV
FSRKHIFYEIGSNSGVVFSKEIEDQNERQDEFFTKFFEKHPEINAVQLQNLLNQMTWSSLGSRQPFFSLE
ACQGILALLDLNASGTMSIQEFRDLWKQLKLSQKVFHKQDRGSGYLNWEQLHAAMREAGIMLSDDVCQLM
LIRYGGPRLQMDFVSFIHLMLRVENMEDVFQNLTQDGKGIYLQKPEWMMMALYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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