CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS42801.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
42801.1 |
Public |
Homo sapiens |
2 |
CARF |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:79800](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:42801.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:79800](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 42801.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000402905.7 |
ENSP00000384006.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000402905.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000384006.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000402905](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000384006](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000438828.4 |
ENSP00000414644.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000438828.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000414644.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000438828](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000414644](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001104586.4 |
NP_001098056.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001104586.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001098056.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001104586](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001098056](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001098056.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001322427.3 |
NP_001309356.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001322427.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001309356.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001322427](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001309356](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001309356.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001322428.3 |
NP_001309357.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001322428.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001309357.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001322428](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001309357](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001309357.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_024744.17 |
NP_079020.13 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_024744.17](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_079020.13](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_024744](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_079020](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_079020.13](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 42801.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2178 nt): ATGGAACAATCTAATGATTCATTAAGAGTCAACCATAATGACGGTGAAGAGTCAAAAACCAGTGCTCAAG TATTTGAGCATCTAATCTGTATGGACTCCAGGGATTCTTCCTTTGGACAAAATGATTCTCCTACAGTTTT GCCCATCACTACTCGTGAAGCAAATAATTCACTCATATCACAGAATATACCAGGGCCCCTGACTCAGACA CAGACTCTTTCTGCAGAGCAATTCCATCTAGTGGACCAAAATGGGCAGGCTATTCAATATGAACTTCAGT CATTGGGGGAATCCAATGCACAAATGATGATCGTTGCCAGCCCAACAGAAAATGGACAGGTACTTCGTGT AATTCCACCTACCCAGACAGGAATGGCACAAGTGATTATACCTCAGGGGCAACTTGTGGATGTGAATAGT CCTCGGGATGTCCCTGAAGAGAAACCCAGTAACAGAAACTTACCAACTGTAAGAGTGGATACTCTAGCAG ACAATACCAGCAATTACATTCTTCATCCTCAAACATCCTTCCCATTGCCCAAAAAGTCAGTGACCGGAAT GCTGGAAGAACCCCTTCTGGGGCCTCTTCAGCCACTTTCTTCTAATACACCTATATGGGCCTGCCGTCTT AGGAGCTGTGAGAAAATTGGAGATTCATACCGTGGCTACTGTGTAAGTGAGACTGAATTAGAAAGTGTCC TAACATTTCACAAGCAGCAAACACAGAGTGTTTGGGGGACCCGTCAGTCTCCAAGCCCAGCCAAGCCTGC TACACGCTTGATGTGGAAATCCCAGTATGTTCCATATGATGGAATCCCATTTGTTAATGCAGGGAGTAGA GCTGTGGTAATGGAGTGTCAGTATGGGCCAAGAAGAAAAGGTTTCCAGTTAAAAAAAGTCAGTGAGCAGG AAAGCAGGTCTTGTCAGCTCTACAAAGCCACTTGTCCAGCTCGGATTTACATTAAAAAGGTACAGAAGTT TCCTGAATATAGAGTTCCTACAGACCCCAAAATTGACAAGAAAATTATCAGAATGGAGCAGGAGAAAGCT TTTAACATGCTAAAGAAGAACTTGGTAGATGCTGGTGGTGTTCTTAGGTGGTATGTACAGTTACCTACAC AGCAAGCTCATCAGTATCATGAATTAGAGACTCCCTGCCTCACTTTGTCACCTTCTCCTTTTCCTGTGTC TTCTCTTGAAGAAGAGGAAACTGCAGTTAGAGATGAGAATTGTGCATTACCCTCACGTTTACATCCTCAA GTAGCACATAAGATTCAAGAATTAGTATCACAGGGAATAGAACAAGTGTATGCAGTAAGGAAACAGCTAA GAAAATTTGTGGAAAGGGAACTGTTCAAACCCGATGAGGTACCTGAAAGACATAATTTATCTTTTTTTCC AACTGTAAATGATATAAAAAATCACATCCATGAGGTACAGAAATCCTTGAGAAATGGAGATACGGTATAT AACTCAGAGATTATTCCAGCAACGCTTCAATGGACTACAGACAGTGGGAATATTCTCAAAGAGACCATGA CAGTTACATTTGCAGAAGGAAATTCACCAGGAGAATCAATTACCACCAAAGTGGAAACAAATCAGACCAG GGGTTCTTTGTCTCCTGAGCCAACCCACTTGCTCTCCTCACTCTCCTCATTTCAGCCCAAAATATTTACA CAACTACAGGGTTTGCAGTTACAACCAAGGTACACCTCTCCTGATGAATCACCAGCTGTGGTATCAGTAA ATAACCAGCCGTCCTCTAGTCCTTCAGGACTTCTGGATACAATAGGAAGTGCTGTAATGAATAATAATTC TCTACTGCTTGGTCAAAGTCATAGCCTTCAAAGAGATACATGCTTAACCCAAAACAATAGTACTGCCTCC ACCATGGGTAACCTTCCAGAACCAGATCAAAATCTAGTTGCAATGGACGAGCTGGTAGAAGTTGGAGATG TTGAGGATACAGGGAATCTGGAAGGAACTGTTCATCGGATTCTGTTGGGAGATGTGCAGACTATTCCAAT ACAGATTATAGACAACCACTCAGCTCTTATTGAAGAAAATCCAGAAAGTACCATTTCTGTGAGCCAAGTT AAACAAGAACCCAAAGAACCAGCATTGTCTATGGAAGCAAAAAAAACTGTGGACTATAAGAAATTATCTG CTACATAA
Translation (725 aa): MEQSNDSLRVNHNDGEESKTSAQVFEHLICMDSRDSSFGQNDSPTVLPITTREANNSLISQNIPGPLTQT QTLSAEQFHLVDQNGQAIQYELQSLGESNAQMMIVASPTENGQVLRVIPPTQTGMAQVIIPQGQLVDVNS PRDVPEEKPSNRNLPTVRVDTLADNTSNYILHPQTSFPLPKKSVTGMLEEPLLGPLQPLSSNTPIWACRL RSCEKIGDSYRGYCVSETELESVLTFHKQQTQSVWGTRQSPSPAKPATRLMWKSQYVPYDGIPFVNAGSR AVVMECQYGPRRKGFQLKKVSEQESRSCQLYKATCPARIYIKKVQKFPEYRVPTDPKIDKKIIRMEQEKA FNMLKKNLVDAGGVLRWYVQLPTQQAHQYHELETPCLTLSPSPFPVSSLEEEETAVRDENCALPSRLHPQ VAHKIQELVSQGIEQVYAVRKQLRKFVERELFKPDEVPERHNLSFFPTVNDIKNHIHEVQKSLRNGDTVY NSEIIPATLQWTTDSGNILKETMTVTFAEGNSPGESITTKVETNQTRGSLSPEPTHLLSSLSSFQPKIFT QLQGLQLQPRYTSPDESPAVVSVNNQPSSSPSGLLDTIGSAVMNNNSLLLGQSHSLQRDTCLTQNNSTAS TMGNLPEPDQNLVAMDELVEVGDVEDTGNLEGTVHRILLGDVQTIPIQIIDNHSALIEENPESTISVSQV KQEPKEPALSMEAKKTVDYKKLSAT
|