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Report for CCDS31966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31966.1 Public Homo sapiens 13 TSC22D1 24 110 108 CCDS HistoryNCBI Gene:8848Re-query CCDS DB by CCDS ID:31966.1Re-query CCDS DB by GeneID:8848See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31966.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458659.3 ENSP00000397435.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000458659.3Link to Ensembl Protein Viewer:ENSP00000397435.2Re-query CCDS DB by Nucleotide ID:ENST00000458659Re-query CCDS DB by Protein ID:ENSP00000397435
Original member Current member NCBI NM_183422.4 NP_904358.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_183422.4Link to Protein Sequence:NP_904358.2Re-query CCDS DB by Nucleotide ID:NM_183422Re-query CCDS DB by Protein ID:NP_904358Link to BLAST:NP_904358.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_904358.2 1073 Q15714-1 1073 100% 0 0

Chromosomal Locations for CCDS 31966.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 44434626 44434883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44436044 44436095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44573163 44576074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3222 nt):
ATGCACCAGCCGCCTGAGTCCACCGCCGCGGCCGCCGCCGCTGCAGACATTAGCGCTAGGAAGATGGCGC
ACCCGGCAATGTTCCCTCGAAGGGGCAGCGGTAGTGGCAGCGCCTCTGCTCTCAATGCAGCAGGTACCGG
CGTCGGTAGTAATGCCACATCTTCCGAGGATTTTCCGCCTCCGTCGCTGCTTCAGCCGCCGCCCCCTGCA
GCATCTTCTACGTCGGGACCACAGCCTCCGCCTCCACAAAGCCTGAACCTCCTTTCGCAGGCTCAGCTGC
AGGCACAGCCTCTTGCGCCAGGCGGAACTCAAATGAAAAAGAAAAGTGGCTTCCAGATAACTAGCGTTAC
TCCTGCTCAGATCTCCGCTAGTATCAGCTCTAACAACAGTATAGCAGAGGACACTGAGAGCTATGATGAT
CTGGATGAATCTCACACGGAAGATCTCTCTTCTTCGGAGATCCTTGATGTGTCACTTTCCAGGGCTACTG
ACTTAGGGGAGCCCGAACGCAGCTCCTCAGAAGAGACCCTAAATAACTTCCAGGAAGCCGAGACACCTGG
GGCAGTCTCTCCCAACCAGCCCCACCTTCCTCAGCCTCATTTGCCTCACCTTCCACAACAGAATGTTGTG
ATCAATGGGAATGCTCATCCACACCACCTCCATCACCACCATCAGATTCATCATGGGCACCACCTCCAAC
ATGGTCACCACCATCCATCTCATGTTGCTGTGGCCAGTGCATCCATTACTGGTGGGCCACCCTCAAGCCC
AGTATCTAGAAAACTCTCTACAACTGGAAGCTCTGACAGTATCACACCAGTTGCACCAACTTCTGCTGTA
TCATCCAGTGGTTCACCTGCATCTGTAATGACTAATATGCGTGCTCCAAGTACTACAGGTGGAATAGGTA
TAAATTCTGTTACTGGCACTAGTACAGTAAATAATGTTAACATTACTGCTGTGGGTAGTTTTAATCCTAA
TGTGACAAGCAGCATGCTTGGTAATGTTAATATAAGTACAAGCAATATTCCTAGTGCTGCTGGTGTGAGT
GTTGGGCCTGGAGTTACCAGTGGTGTTAATGTGAATATCTTGAGTGGCATGGGCAATGGTACTATTTCTT
CCTCTGCTGCTGTTAGCAGTGTTCCTAATGCAGCTGCAGGGATGACTGGGGGATCGGTTTCAAGTCAGCA
GCAACAACCAACAGTTAACACTTCGAGGTTCAGAGTTGTGAAGTTAGATTCTAGTTCTGAGCCCTTTAAA
AAAGGTAGATGGACTTGCACTGAGTTCTATGAAAAAGAAAATGCTGTACCTGCTACAGAAGGTGTGCTGA
TAAATAAAGTGGTGGAGACTGTAAAGCAAAATCCGATAGAAGTGACTTCTGAAAGGGAGAGCACTAGTGG
GAGTTCAGTGAGCAGTAGTGTCAGCACACTGAGTCACTATACAGAGAGTGTGGGAAGTGGAGAGATGGGA
GCCCCTACTGTGGTGGTGCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAACAACCAGCTCTCCAAG
GTGTGACCCTCCAACAGATGGATTTTGGTAGCACTGGTCCACAGAGTATTCCAGCAGTTAGTATACCACA
GAGTATTTCTCAGTCACAGATCTCACAAGTACAATTACAGTCTCAAGAACTGAGCTATCAGCAAAAGCAA
GGTCTTCAGCCAGTACCTCTGCAAGCCACTATGAGTGCTGCAACTGGTATCCAGCCATCGCCTGTAAATG
TGGTTGGTGTAACTTCAGCTTTAGGTCAGCAGCCTTCCATTTCCAGTTTGGCTCAACCCCAGCTACCATA
TTCTCAGGCGGCTCCTCCAGTGCAAACTCCCCTTCCAGGGGCACCACCACCCCAACAGTTACAGTATGGA
CAACAGCAACCAATGGTTTCTACACAGATGGCCCCAGGCCATGTCAAATCAGTGACTCAAAATCCTGCTT
CAGAGTATGTACAACAGCAGCCAATTCTTCAAACAGCAATGTCCTCCGGACAGCCCAGTTCTGCAGGAGT
AGGAGCAGGAACAACAGTGATTCCTGTGGCTCAGCCACAGGGTATCCAGCTGCCAGTGCAGCCCACAGCA
GTCCCAGCACAACCTGCAGGGGCATCTGTCCAGCCTGTTGGCCAGGCTCCGGCAGCAGTGTCTGCTGTAC
CTACTGGCAGTCAGATTGCAAATATTGGTCAGCAAGCAAACATACCTACTGCAGTGCAGCAGCCCTCTAC
CCAGGTTCCACCTTCAGTTATTCAGCAGGGTGCTCCTCCATCTTCGCAAGTGGTTCCACCTGCTCAAACT
GGGATTATTCATCAGGGAGTTCAAACTAGTGCTCCAAGCCTTCCTCAACAATTGGTTATTGCATCCCAAA
GTTCCTTGTTAACTGTGCCTCCCCAGCCACAAGGAGTAGAACCAGTAGCTCAAGGAATTGTTTCACAGCA
GTTGCCTGCAGTTAGTTCTTTGCCCTCTGCTAGTAGTATTTCTGTTACAAGTCAGGTTAGTTCAACTGGT
CCTTCTGGAATGCCTTCTGCCCCAACAAACTTGGTTCCACCACAAAATATAGCACAAACCCCTGCTACCC
AAAATGGTAATTTGGTTCAAAGTGTTAGTCAACCTCCCTTGATAGCAACTAATACAAATTTGCCTTTGGC
ACAACAGATACCACTAAGTTCTACCCAGTTCTCCGCACAATCATTAGCTCAGGCAATTGGAAGCCAAATT
GAAGATGCCAGGCGTGCAGCGGAGCCCTCCTTAGTTGGCTTACCTCAGACTATCAGTGGTGACAGTGGGG
GAATGTCAGCAGTTTCAGATGGGAGTAGCAGCAGCCTAGCAGCCTCTGCTTCTCTTTTCCCGTTGAAGGT
GCTACCGCTGACGACACCCCTGGTGGATGGCGAGGATGAGAGCTCCTCTGGTGCAAGTGTGGTAGCTATT
GACAACAAAATCGAGCAAGCTATGGATCTAGTGAAAAGCCATTTGATGTATGCGGTCAGAGAAGAAGTGG
AGGTCCTCAAAGAGCAAATCAAAGAACTAATAGAGAAAAATTCCCAGCTGGAGCAGGAGAACAATCTGCT
GAAGACACTGGCCAGTCCTGAGCAGCTTGCCCAGTTTCAGGCCCAGCTGCAGACTGGCTCCCCCCCTGCC
ACCACCCAGCCACAGGGCACCACACAGCCCCCCGCCCAGCCAGCATCGCAGGGCTCAGGACCAACCGCAT
AG

Translation (1073 aa):
MHQPPESTAAAAAAADISARKMAHPAMFPRRGSGSGSASALNAAGTGVGSNATSSEDFPPPSLLQPPPPA
ASSTSGPQPPPPQSLNLLSQAQLQAQPLAPGGTQMKKKSGFQITSVTPAQISASISSNNSIAEDTESYDD
LDESHTEDLSSSEILDVSLSRATDLGEPERSSSEETLNNFQEAETPGAVSPNQPHLPQPHLPHLPQQNVV
INGNAHPHHLHHHHQIHHGHHLQHGHHHPSHVAVASASITGGPPSSPVSRKLSTTGSSDSITPVAPTSAV
SSSGSPASVMTNMRAPSTTGGIGINSVTGTSTVNNVNITAVGSFNPNVTSSMLGNVNISTSNIPSAAGVS
VGPGVTSGVNVNILSGMGNGTISSSAAVSSVPNAAAGMTGGSVSSQQQQPTVNTSRFRVVKLDSSSEPFK
KGRWTCTEFYEKENAVPATEGVLINKVVETVKQNPIEVTSERESTSGSSVSSSVSTLSHYTESVGSGEMG
APTVVVQQQQQQQQQQQQQPALQGVTLQQMDFGSTGPQSIPAVSIPQSISQSQISQVQLQSQELSYQQKQ
GLQPVPLQATMSAATGIQPSPVNVVGVTSALGQQPSISSLAQPQLPYSQAAPPVQTPLPGAPPPQQLQYG
QQQPMVSTQMAPGHVKSVTQNPASEYVQQQPILQTAMSSGQPSSAGVGAGTTVIPVAQPQGIQLPVQPTA
VPAQPAGASVQPVGQAPAAVSAVPTGSQIANIGQQANIPTAVQQPSTQVPPSVIQQGAPPSSQVVPPAQT
GIIHQGVQTSAPSLPQQLVIASQSSLLTVPPQPQGVEPVAQGIVSQQLPAVSSLPSASSISVTSQVSSTG
PSGMPSAPTNLVPPQNIAQTPATQNGNLVQSVSQPPLIATNTNLPLAQQIPLSSTQFSAQSLAQAIGSQI
EDARRAAEPSLVGLPQTISGDSGGMSAVSDGSSSSLAASASLFPLKVLPLTTPLVDGEDESSSGASVVAI
DNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPA
TTQPQGTTQPPAQPASQGSGPTA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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