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Report for CCDS45886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45886.1 Public Homo sapiens 18 HSBP1L1 24 110 108 CCDS HistoryNCBI Gene:440498Re-query CCDS DB by CCDS ID:45886.1Re-query CCDS DB by GeneID:440498See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45886.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000451882.3 ENSP00000414236.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000451882.3Link to Ensembl Protein Viewer:ENSP00000414236.1Re-query CCDS DB by Nucleotide ID:ENST00000451882Re-query CCDS DB by Protein ID:ENSP00000414236
Original member Current member NCBI NM_001136180.2 NP_001129652.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136180.2Link to Protein Sequence:NP_001129652.1Re-query CCDS DB by Nucleotide ID:NM_001136180Re-query CCDS DB by Protein ID:NP_001129652Link to BLAST:NP_001129652.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129652.1 74 C9JCN9 74 100% 0 0

Chromosomal Locations for CCDS 45886.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 79964736 79964786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 79966612 79966678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 79968089 79968183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 79970440 79970451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (225 nt):
ATGGACGTGCGGGGCCCTGAAGCCCCCGGCGGGCGCGCGCTGCGGGACGCGGCAGAAAATCTATTTCAGG
AACTTCAGGAACATTTTCAAGCTCTGACGGCAACATTAAACCTCAGAATGGAAGAAATGGGAAATCGCAT
TGAGGACTTACAGAAGAATGTCAAGGACTTAATGGTGCAAGCTGGCATTGAAAATTCTATTAAAGAACAA
ATGCTGAAGACCTAA

Translation (74 aa):
MDVRGPEAPGGRALRDAAENLFQELQEHFQALTATLNLRMEEMGNRIEDLQKNVKDLMVQAGIENSIKEQ
MLKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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